The target fragment was obtained by amplification of cDNA with conventional primer and cloned into a pMD19-T vector (Takara, Dalian, China). The recombinant vector was transformed into DH5α Escherichia coli cells and shaken overnight at 37 °C; the cells were then purified with plasmid Mini Kit2 (Omega BioTek, USA), according to the manufacturer’s recommendations (Takara, Dalian, China). The positive recombinant plasmids were confirmed through sequencing analysis (Takara, Dalian, China). The recombinant plasmid concentrations were measured with UV spectrophotometry (NanoDrop one) and converted into copy numbers. The plasmid DNA was stored at − 80 °C until further use.
Trizol reagent
TRIzol reagent is a ready-to-use reagent for the isolation of total RNA, DNA, and proteins from a variety of biological samples. It is based on a monophasic solution of phenol, guanidine isothiocyanate, and other proprietary components that facilitate the separation of the sample into an aqueous phase containing RNA, an interphase containing DNA, and an organic phase containing proteins.
Lab products found in correlation
10 protocols using trizol reagent
RNA Extraction and cDNA Cloning Protocol
The target fragment was obtained by amplification of cDNA with conventional primer and cloned into a pMD19-T vector (Takara, Dalian, China). The recombinant vector was transformed into DH5α Escherichia coli cells and shaken overnight at 37 °C; the cells were then purified with plasmid Mini Kit2 (Omega BioTek, USA), according to the manufacturer’s recommendations (Takara, Dalian, China). The positive recombinant plasmids were confirmed through sequencing analysis (Takara, Dalian, China). The recombinant plasmid concentrations were measured with UV spectrophotometry (NanoDrop one) and converted into copy numbers. The plasmid DNA was stored at − 80 °C until further use.
RNA Extraction and Gene Expression Profiling
For each sample, 100 ng RNA input was taken for gene expression analysis. Gene expression profiling was conducted with Affymetrix GeneTitan Multi-Channel platform with Clariom S human microarray and GeneChip WT (whole transcriptome) Plus kit (Affymetrix Inc, Santa Clara, VA, USA) according to the manufacturer’s protocol. Clariom S microarray provides data for more than 20,000 well-annotated genes.
Quantitative RT-PCR Analysis of Aquaporin and Cytokine Expression in HK-2 Cells
Quantifying AQP1 Expression in Mouse Tissues
Primers used in the qPCR analysis
Primer | Sequence |
---|---|
AQP1 | Forward primer 5′-CCTGCTGGCCATTGACTACA-3′ |
AQP1 | Reverse primer 5′-TGGTTTGAGAAGTTGCGGGT-3′ |
β-Actin | Forward primer 5′-CGCGAGTACAACCTTCTTGC-3′ |
β-Actin | Reverse primer 5′-CGTCATCCATGGCGAACTGG -3′ |
RNA Extraction and Gene Expression Analysis
Quantitative Real-Time PCR Analysis of ER Stress Markers
The Sequences of Primers Used for Real-Time Quantitative PCR
Genes | Forward Primer (5’-3’) | Reverse Primer (5’-3’) |
---|---|---|
GRP78 | TGTGTGTGAGACCAGAACCG | AACACACCGACGCAGGAATA |
Chop | CCTGAGGAGAGAGTGTTCCAG | GACACCGTCTCCAAGGTGAA |
β-actin | GTGCTATGTTGCTCTAGACTTCG | ATGCCACAGGATTCCATACC |
TMEM92 Protein and mRNA Analysis
RNA extraction and cDNA synthesis were performed using the TRIzol reagent (Corning co, USA) and PrimeScript RT Reagent Kit (Promega, Beijing, China), respectively. mRNA expression levels of TMEM92 were quantified using the SYBR Premix Ex Taq system (Promega, Beijing, China), with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) expression levels serving as a normalization control. The relative levels of TMEM92 were determined using the comparative quantification cycle (Cq) method (2−ΔΔCq) based on three repeated measurements. The primers used in this study are listed below:
Investigating Anti-inflammatory Effects of DHL
Quantifying Orexin A Expression in Mice
Quantifying Hypothalamic Gene Expression
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