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6 protocols using p shc

1

Signaling Dynamics in FDH Cells

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FDH cells expressing βc and WT or P248L IL3Rα were stimulated with 100 ng/mL IL3 for specified time points up to 60 minutes before lysis with NP-40 lysis buffer [1% NP-40 (v/v), 150 mmol/L NaCl, 50 mmol/L Tris-HCl pH 8.0, and 10% glycerol (v/v)] for 20 minutes on ice. Lysates were cleared by centrifugation and immunoblotted with antibodies for pJAK1 (Cell Signaling Technology #3331, RRID: AB_2265057), pJAK2 (Cell Signaling Technology #3771, RRID: AB_330403), pSTAT1 (Tyr701; BD #612233, RRID: AB_399556), pSTAT5 (Cell Signaling Technology #9359, RRID: AB_823649), STAT1 (BD #610185, RRID: AB_397584), pSHC (Cell Signaling Technology #2434, RRID: AB_10841301), SHC (Upstate Biotechnology, Inc., #06-203, RRID: AB_310070), pβcY593 (87 (link)), βc (84 (link)), and Actin (Chemicon International, Inc., #MAB1501, RRID: AB_2223041) and goat anti-rabbit (Invitrogen #31463, RRID: AB_228333) or goat anti-mouse (Invitrogen #31437, RRID: AB_228295) IgG Fc secondary antibodies. Immunoblots were analyzed using chemiluminescence on a Bio-Rad Chemidoc Touch.
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2

EGFR and Signaling Pathway Protein Analysis

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Cells were lysed in RIPA buffer supplemented with protease inhibitors (Roche) and phosphatase inhibitors (Thermo Scientific). Whole-cell lysates were then separated using 6% or 8% SDS-PAGE followed by transferring to a nitrocellulose membrane. The membrane was probed with the antibodies against either N-terminal epitope EGFR (Thermo Scientific), C-terminal epitope EGFR (Bethyl), 4G10 (Millipore), β-actin, Stat3, p-Stat3, Akt, p-Akt, p-Stat5 or p-Shc (Cell Signaling Technology). Then, the blot was incubated overnight at 4°C and then with HRP-conjugated anti-rabbit or anti-mouse IgG antibody for 1 hour at room temperature. The proteins were then visualized with SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientifc).
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3

Detailed Immunostaining and Inhibitor Protocol

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Antibodies against FN (Cat#15613-1-AP), COL1A1 (Cat#67288-1-lg), α-SMA (Cat#55135-1-AP, Cat#67735-1-AP), FGFR1 (Cat#60325-1-lg), CD31 (Cat#60287-1-lg), CD45 (Cat#11265-1-lg), EpCAM (Cat#60287-1-lg), Vimentin (Cat#10366-1-AP) and GAPDH (Cat#60004-1-lg) were purchased from Proteintech (Rosemont, IL, USA). Antibodies against p-EGFR (Cat#3777S), EGFR (Cat#4267), p-VEGFR2 (Cat#2478), VEGFR2 (Cat#9698), PDGFRβ (Cat#3169), p-PLCγ1 (Cat#2821), PLCγ1 (Cat#5690), p-GAB1 (Cat#12745), GAB1 (Cat#3232), p-SHC (Cat#2434), SHC (Cat#2432), p-AKT (Cat#4060), AKT (Cat#9272), p-ERK1/2 (Cat#4370), ERK1/2 (Cat#4695), p-STAT3 (Cat#4113), STAT3 (Cat#9139), GRB2 (Cat#3972), GST (Cat#2642) were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against pY (Cat#EPR16871), p-PDGFRβ (Cat#ab248657), p-FGFR1 (Cat#ab59194), α-SMA (Cat#ab124964), pS/pT (Cat#ab117253) and IgG (Cat#EPR25A and Cat#ab37415) were purchased from Abcam (Cambridge, MA, USA). Bleomycin, nintedanib and PHPS1 were purchased from Targetmol (Boston, MA, USA).
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4

Western Blot Analysis of TGFβ Signaling

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The antibodies used for Western blotting included phosphorylated (p)-Smad2 (S465/467, Cell Signaling Technology), Smad2 (Cell Signaling Technology), p-Shc (Y239,240, Cell Signaling Technology), Shc (Abcam), PlxnD1 (Thermo Fisher Scientific), PECAM-1 (Santa Cruz Biotechnology), Alk5 (Sigma-Aldrich for biochemical assays and R&D for tensional force application), TGFβ1 to TGFβ3 neutralization antibody (R&D), Lamin B1 (Abcam), and heat shock protein 90 (Hsp90; Cell Signaling Technology). The inhibitor SB431542 (Sigma-Aldrich) was used at a concentration of 10 μM. Recombinant mouse TGFβ2 was purchased from R&D Systems (Bio-Techne) and used at 5 ng/ml.
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5

Immunoblotting of Activated Signaling Proteins

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Protein aliquots of 25 μg each were resolved by SDS polyacrylamide gel electrophoresis (Bio-Rad, Hercules, CA) or 1000 μg aliquots of total proteins were immunoprecipitated with the appropriate antibodies. The immune complexes were recovered with Protein G-Sepharose or Protein A-Sepharose beads (Zymed Laboratories, California). Electrophoresed protein samples or immunoprecipitated samples were transferred to polyvinylidene difluoride membranes (Bio-Rad). After washing three times, the membranes were incubated with blotting-grade blocker (Bio-Rad) for 1 h at room temperature and overnight at 4 °C with primary antibodies to p-AXL (Tyr702), t-AXL, p-EGFR, p-IGF-1R, t-IGF-1R, p-Akt (Ser473), t-Akt, p-Gab1, t-Gab-1, p-Shc, t-Shc, IRS-1,β-actin (13E5) (1:1,000 dilution; Cell Signaling Technology, Danvers, MA, USA), p-Erk1/2 (Thr202/Tyr204), t-Erk1/2, and t-EGFR (1:1000 dilution, R&D systems).
After washing three times, the membranes were incubated for 1 h at room temperature with HRP-conjugated species-specific secondary antibody. Immunoreactive bands were visualized using SuperSignal West Dura Extended Duration Substrate Enhanced Chemiluminescent Substrate (Pierce Biotechnology). Each experiment was independently performed at least three times.
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6

Organoid Drug Response Profiling

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Organoids were suspended in Matrigel, plated in 24-well plates, and overlaid with AdDF+++ medium. After overnight incubation, medium was replaced with AdDF+++ medium containing a drug and incubated for the indicated times. Organoids were harvested using Cell Recovery Solution (Corning) and washed three times with ice-cold PBS according to the manufacturer's instructions. pEGFR (#2234), EGFR (#2232), pAKT (#4060), AKT (#4691), pERK (#4370), ERK (#4696), pMEK1/2 (#9154), MEK1/2 (#4694), pS6 (#4858), S6 (#2217), pERBB2 (#2243), ERBB2 (#2165), Src (#2108), pSTAT3 (#9145), STAT3 (#9139), pRET (#3221), RET (#3223), pShc (#2434), Shc (#2432), and secondary antibodies (#7074 and #7076) were purchased from Cell Signaling Technology. pSrc (MAB2685) was purchased from R&D systems and Actin (MAB1501R) was from Merck Millipore.
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