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25 protocols using 3 ml syringe

1

Isolation of Murine Spleen and Lung Cells

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Mice were sacrificed by CO2 asphyxiation followed by cervical dislocation, and the spleen and lungs were aseptically removed. The spleens were homogenized using the plunger of a 3-mL syringe (Becton Dickinson) through a 100-μm strainer and washed with RPMI-1640 medium (GenDEPOT). The lungs were minced using sterile scissors and digested in 5 mL RPMI containing 3 mg/mL Collagenase A (Sigma) and 0.15 mg/mL DNase I (Sigma) at 37 °C for 1 h. Digested lungs were homogenized using the plunger of a 3-mL syringe (Becton Dickinson) and filtered through a 40-μm strainer (EZFlow Cell Strainer, Foxx Life Sciences). Red blood cells were lysed using 0.83% ammonium chloride. Cells were washed and resuspended with complete RPMI (RPMI 1640, 5% FBS, 100 U/mL penicillin, 100 μg/mL streptomycin). The total number of live cells isolated was determined by trypan blue exclusion staining. The absolute number of cell populations were calculated based on the numbers of splenocytes/leukocytes from the lungs and the percentages of populations as determined by FACS.
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2

Intragastric Ethanol Administration Protocol

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Ethanol was administered intragastrically (i.g.) via a 12-cm length of polyethylene-50 tubing (PE-50 Clay Adams, Parsippany, NJ, USA) attached to a 3 ml syringe (Becton Dickinson, Rutherford, NJ, USA) with a 23-gauge needle. Ethanol doses of 0.5, 1.25, 2.5 and 3.25 g/kg resulted from the administration of a volume equivalent to 0.015 ml per gram of body weight of 4.2% 10.5%, 21%, or 27.3% v/v ethanol (Porta Hnos, Córdoba, Argentina) solutions, respectively. An equivalent volume of tap water was administered as vehicle (0.0 g/kg). All of the animals were gently intubated in approximately 5 s, and the solutions were then slowly delivered over 3–4 s into the stomach. The doses and mode of administration were selected based on previous studies [14 (link),16 (link)].
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3

Silk-HRP Hydrogel Fiber Fabrication

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Upon mixing the silk-HRP hydrogel solution and before setting, a 3 mL syringe (Becton, Dickinson and Company, Franklin Lakes, New Jersey) equipped with either a 16 G or 21 G needle was used to extract the homogenously mixed solution from a 6-well plate. Prior to injection, silicone tubing (Dow Corning Corporation, Midland, MI) was prepared by rinsing, autoclaving and cutting the tubing into 20 cm long pieces. The syringe with the hydrogel solution was degassed and hydrogel solution was injected into 1 mm or 1.98 mm ID silicone tubing that was open at both ends (Figure 1A). Cast tubing was incubated at room temperature for 1 hour during gelation. Following gelation, the tubing was placed in an oven and incubated for 24 hours (1 mm) or 48 hours (1.98 mm) at 60 °C or room temperature (RT) (18–22° C) (Figure 1B). Upon dehydration, the fibers were removed from tubing using a 16 G needle (McMaster-Carr, Robinsville, NJ) and prepared for post-processing (Figure 1C). The 60 °C fibers were removed from tubing after 24 hours and the RT fibers required a week to dry prior to ejection.
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4

Microfluidic Platform for Shear Stress Experiments

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The PDMS microchannels were placed on top of the Ti6Al4V coupons and clamped between two sheets of polypropylene by screws on all four corners (figure 1b). The direction of lay was perpendicular to the flow direction. The roughest surface (Ra = 2.1 μm) necessitated additional sealing with a thin film of cured PDMS (8:1 ratio elastomer: curing agent) and baked at 60°C for 2 hours. The blood analog was introduced into the microfluidic channel from a 3 mL syringe (Becton, Dickinson and Company, NJ, USA) by a syringe pump (Chemyx, Inc., TX, USA). Flexible plastic tubing (Tygon, Saint-Gobain PPL Corporation, PA, USA) connected the syringe needle to the microchannel inlet and the outlet to a waste reservoir. The syringe and inlet tube contents were maintained at 37°C with the aid of heating pads and a syringe heater control unit (New Era Pump Systems, Inc., NY, USA). Wall shear rates of 1000 s−1, 2000 s−1 and 5500 s−1 were applied by setting the volumetric flow-rate to 6 μL/min, 12 μL/min and 34 μL/min respectively.
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5

Cardiac Blood Collection and Serum Analysis

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Approximately 1.5 ml of blood was collected by cardiac puncture from the ventricle by using a 3 ml syringe (Becton Dickinson, Franklin Lakes, USA) and a 19-gauge needle (Becton Dickinson) and transferred to a heparinized tube. Collected blood was centrifuged for 10 min at 13,000×g (Expresso Centrifuge, Thermo Fisher Scientific). After centrifugation, serum was pipetted into a new 1.5 ml microfuge tube and used immediately to measure Na+, Cl, K+ concentrations (Electrolyte Analyzer AVL 9180, Roche, Mannheim, Germany), osmolarity (Vapro Vapor Pressure 5520, Wescor, South Logan, USA), pCO2 (partial pressure of carbon dioxide), HCO3 and pH (Radiometer ABL5, Copenhagen, Denmark).
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6

Isolation and Immobilization of Cells

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The sample was loaded into a 3mL syringe (BD, Franklin Lakes, NJ,) followed by processing with the iFCS device at a throughput of 100 μL/min. After separation, the iFCS device was flushed by 1× PBS at 500 μL/min for 20 minutes to remove cells in the outlet reservoir. Collected cells were preserved in RPMI-1640 medium (Life Technologies, Carlsbad, CA) supplemented with 10 % (v/v) FBS and 1% (v/v) penicillin/streptomycin solution. Collected cells were then concentrated and immobilized onto poly-L-lysine coated glass slides with a customized cell collection chamber.
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7

Isolation of Murine Mesenchymal Stem Cells

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All animal work was approved by the Emory University Institutional Animal Care and Use Committee (IACUC) and carried out according to the guidelines. mMSCs were isolated from 6 week old male C57Bl/6 mice (Jackson Laboratories, Bar Harbor, ME). Mice were sacrificed and femurs and tibias were harvested. The marrow was flushed from the bones using 21-gauge needle and 3 mL syringe (BD Medical, Franklin Lakes, NJ, cat # 309585) using complete RPMI 1640 (Life Technologies, Carlsbad, CA, cat# 22400-105) growth media supplemented with 20% Premium Select Grade Fetal Bovine Serum (FBS; Atlanta Biologicals, Norcross, GA, cat# S11550), 2 mM glutamine (cat# 25030-081), 100 units/mL penicillin, and 100 μg/mL streptomycin (cat# SV30010), all from Life Technologies. Marrow was pipette into a homogeneous cell suspension and filtered through a 70-µm nylon mesh filter (BD Falcon, Franklin Lakes, NJ, cat# 352350) prior to plating. Additional details can be found in the Online Data Supplement.
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8

Blood Collection and Preparation

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At predetermined time points mice were sacrificed using CO2 asphyxiation and blood was obtained via cardiac puncture using a 3ml syringe (BD San Diego) and 30-gauge × 1″ needle (BD San Diego) and injected into Vacutainer® collection tubes. For experiments studying primary human monocytes subjects were recruited from the general population near Davis, California. Blood was obtained by venipuncture into Vacutainer® collection tubes and maintained at room temperature. For flow cytometry and blood differential counts blood was drawn into tubes containing K2EDTA. For lab-on-a-chip adhesion assays blood was drawn into tubes containing sodium heparin. Blood differential counts were determined using a Coulter Act diff Hematology Analyzer (Beckman-Coulter)
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9

Murine Splenic Cell Isolation

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Spleens were aseptically harvested from euthanized mice. forced through 70-μm cell strainers (BD) with the plunger from a 3 mL syringe (BD). Cells were washed twice in cold RPMI or PBS followed by 5 minutes centrifugation at 1800 rpm. Cells were finally resuspended in supplemented RPMI medium containing 10% fetal calf serum (FCS) as previously described (34 (link)). Cells were counted using an automatic Nucleocounter (Chemotec) and cell suspensions were adjusted to 2×105 cells/well for ELISA and 1–2×106 cells/well for flow cytometry. and serum collection.
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10

Perfusion of Unmodified hWJCs into Decellularized Cochleae

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A total of 6 DCs were reserved as untreated controls. The remaining 12 DCs were presoaked with 37 °C hWJC medium 1 hour prior to perfusion. DCs were perfused with 100 μL containing 100,000 unmodified hWJCs using a 28.5 gauge Ultra-Fine insulin needle and 3 mL syringe (BD Biosciences) in six-well plates (BD Biosciences). Perfusions were administered over a 2-minute duration for each cochlea. After cells were perfused into DCs, 2 mL of prewarmed hWJC medium was added to each well. Perfused cochleae were placed in a 37 °C cell culture incubator. Cochleae were cultured for 7 days and cell culture medium was replaced with 2.5 mL of fresh hWJC medium every 2 days.
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