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1 step nbt bcip substrate solution

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The 1-Step™ NBT/BCIP Substrate Solution is a ready-to-use substrate for the detection and visualization of alkaline phosphatase-conjugated antibodies or proteins in immunohistochemistry, Western blotting, and other immunoassay applications. It provides a colorimetric reaction that produces a blue-purple precipitate at the site of the enzyme-labeled target.

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45 protocols using 1 step nbt bcip substrate solution

1

Osteogenic Differentiation Assay

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Cells were seeded in the 24-well plate and cultured with the osteogenic medium; α-MEM (Thermo Fisher Scientific) supplemented with 10% certified fetal bovine serum (FBS, Thermo Fisher Scientific), 1% antibiotic and antimycotic solution (A/A, Thermo Fisher Scientific), 10 mM β-glycerol phosphate (Sigma-Aldrich), 50 μM 1 ascorbic acid (Sigma-Aldrich), and 100 nM dexamethasone (Sigma Aldrich). Alkaline phosphatase (ALP) staining was performed on day 7 using 1-StepTM NBT/BCIP Substrate Solution (Thermo Fisher Scientific), and Alizarin Red staining (pH 4.1, Sigma Aldrich) for calcified bone matrix (Gregory et al., 2004 (link)) was performed on day 21. The deposition of Alizarin Red under mineralization conditions suggests that bone matrix has been deposited. Whole-well images were captured using BZ-X810 (KEYENCE), and ALP and Alizarin Red positive areas were measured using QuPath (Bankhead et al., 2017 (link)).
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2

Osteoclast and Osteoblast Quantification

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Osteoclast-like cells and osteoblast-like cells were determined as previously described (Miron et al., 2016 (link); Miron and Bosshardt, 2018 (link); Brooks et al., 2019 (link)). Briefly, in the current study, TRAP staining kit (Sigma Aldrich, St. Louis, MO) was used to identify osteoclast-like cells with multi-nuclei brown staining, and were located on the bone perimeter within resorption lacunae (Sato et al., 2015 (link); Lin et al., 2016 (link); Nabeshima et al., 2017 (link)). Using 3 randomly selected views with x200 magnification in each specimen, in a blind manner, two investigators manually counted the number of TRAP staining positive cells, which were finally normalized by the bone area measured using ImageJ software (Nabeshima et al., 2017 (link)).
In different sections, osteoblast-like cells (Sato et al., 2015 (link); Lin et al., 2016 (link); Nabeshima et al., 2017 (link)) were identified using anti-alkaline phosphatase (ALP) antibody (1-StepTM NBT/BCIP Substrate Solution, Thermo Scientific, Rockford, IL). Using the entire image of each specimen with x100 magnification, the percentage of brown, positively stained area for ALP was quantified based on the entire area of each section measured using ImageJ software (Ueno et al., 2020 (link)). The color threshold of ALP staining positive area was determined by consensus of three of the investigators.
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3

Quantification of Osteoblast and Osteoclast Cells

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Osteoblast-like and osteoclast-like cells were identified as previously described (Goodman et al., 2013 (link); Sato et al., 2015 (link); Miron et al., 2016 (link); Brooks et al., 2019 (link)). The tartrate resistant acid phosphatase (TRAP) staining kit (Sigma-Aldrich, St. Louis, MO, United States) was used to identify osteoclast-like cells; multi-nucleated TRAP positive cells located on the bone perimeter within the resorption lacunae were defined as osteoclast-like cells. For the detection of osteoblast-like cells, anti-alkaline phosphatase staining (1-stepTM NBT/BCIP Substrate Solution, Thermo Fisher Scientific, Rockford, IL) was used. The TRAP positive cell number of 6 randomly selected areas in each section and the percentage of ALP positive area of the entire area of each section were quantified using Image J software (National Institutes of Health, United States) according to our previous protocol (Utsunomiya et al., 2021a (link)). The color threshold of each parameter was determined by consensus of three of the investigators. Double-blinded quantitative analysis was conducted by two of the investigators.
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4

Profiling IgE-reactive Pollen Proteins

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Pollen extracts (20 µg/well) were run on a 18% SDS-PAGE gel under reducing conditions and stained with Coomassie Brilliant Blue R-250 or transferred to a polyvinylidene difluoride (PVDF) membrane (GE Waters and Process Technologies, Trevose, PA, USA). After blocking with 3% skim milk in PBST, IgE-reactive components were probed overnight using 1:4-diluted pooled serum from the 7 patients. IgE-bound proteins were detected using alkaline phosphate-conjugated goat anti-human IgE (1:1000) (Sigma-Aldrich) for 1 h, and color was developed with 1-StepTM NBT/BCIP Substrate Solution (Thermo Fisher Scientific, Rockford, IL, USA).
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5

Quantifying Osteoclasts and Bone Formation

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Isolated femurs were fixed overnight in 4% paraformaldehyde and demineralized in 0.5 M ethylenediaminetetraacetic acid (EDTA, pH 7.4). After dehydration, the specimens were embedded in optimal cutting temperature (OCT) compounds. The ROI located 3 mm from the distal end of the femur was cut into transverse sections with ten mm-thickness for subsequent staining44 (link). Tartrate-resistant acid phosphatase (TRAP) staining and alkaline phosphatase (ALP) staining were performed as previously described24 (link)–26 ,42 (link),48 (link),49 (link). The TRAP staining kit (Sigma-Aldrich) identified osteoclast-like cells. Multi-nucleated TRAP-positive cells located on the bone perimeter within the resorption lacunae were defined as osteoclast-like cells. Anti-alkaline phosphatase staining (1-stepTM NBT/BCIP Substrate Solution, Thermo Fisher Scientific) detected bone formation area. The TRAP-positive cell number of three randomly selected areas per bone area (500 μm square) and the percentage of ALP positive area of the bone were quantified using QuPath50 . The color threshold of each parameter was determined by the consensus of three of the investigators. Two investigators, blinded to the treatment group, independently quantified the histological sections.
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6

Rapid Quantification of Alkaline Phosphatase in Scaffolds

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After fixation with formalin, the platforms were washed twice with distilled water for 30 min, and then immersed in an ALP substrate solution (1-Step TM NBT/BCIP Substrate Solution, ThermoScientific). The reaction took place at 37 °C, for 4 h. The ALP present in the array was stained in purple. However, a method based on fluorescence analysis was developed to perform rapid and easy analyses of ALP presence in each individual scaffold. Whole platform images were acquired automatically using a fluorescence microscope equipped with a xyz-controlled table, at an exposure time of 60 ms, using the Calcein filter. The chitosan scaffolds show autofluorescence. The places stained for ALP show a nonfluorescent signal, and black spots can be observed in the exact places where ALP is visibly stained. The relative semiquantitative assessment of ALP per scaffold was performed by increasing the fluorescent signal of the all images equally, and by quantifying the fluorescent signal in each individual scaffold. Scaffolds with lower detected fluorescence were the ones with higher amounts of ALP. The semi-quantitative results for ALP quantification were calculated by dividing the detected intensity in each formulation by the one detected in the protein-free control. Lower ratios represented conditions with higher amount of detected ALP.
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7

Alkaline Phosphatase Staining for Osteogenesis

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For the determination of osteogenic differentiation, an analysis of the alkaline phosphatase activity was performed using staining with 1-Step™ NBT/BCIP Substrate Solution (Thermo Fisher Scientific, Carlsbad, CA, USA) for 90 min. The cells were directly imaged after staining.
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8

PilA Protein Immunoblot Analysis in G. sulfurreducens

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Protein extraction from G. sulfurreducens DL1, ΔihfA-1, and ΔihfB-2 strains was conducted as previously reported (Hernández-Eligio et al., 2020 (link)). Afterward, 1 μg of total protein per sample was incubated with PAGE-Buffer and boiled for 10 min before separation on a 15% SDS-PAGE. After, proteins were transferred to nitrocellulose membranes (Merck-Millipore) for immunoblot analysis using rabbit polyclonal antibodies raised against G. sulfurreducens PilA (Yi et al., 2009 (link)). Blots were blocked with 3% BSA in PBS overnight at 4°C and then incubated with a 1/1,000 dilution of primary antibody for 4 h at room temperature, washed with PBS, and incubated with a 1/5,000 dilution of goat anti-rabbit alkaline phosphatase-conjugated secondary antibody for 2 h at room temperature. After being washed, blots were developed with 1-Step NBT/BCIP substrate solution following manufacturer’s instructions (Thermo Scientific).
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9

Osteogenic Differentiation of Mouse Mesenchymal Stem Cells

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Passage 1 mMSCs were differentiated into osteoprogenitors (mMSC-OPs) using osteogenic induction media Low-glucose DMEM with 10% FBS, 1% antibiotic-antimycotic, 50 μg/mL ascorbic acid and 10 mM β- glycerophosphate) for 10 days. Osteogenic differentiation was confirmed by gene expression of housekeeping gene (beta-2-microglobulin (B2M)(71 (link), 72 (link))) and osteogenic markers Alkaline phosphatase (ALP) and Osteocalcin (OCN) using reverse-transcription polymerase chain reaction (RT-PCR)(73 (link), 74 (link)), and ALP staining using the 1-Step NBT/BCIP Substrate Solution (ThermoFisher)(75 (link)). mMSC cultured under osteogenic conditions for 10 days (mMSC-OPs) demonstrated significantly higher ALP expression (Supplement Fig. 3A). In addition, mMSC-OPs exhibited a 3 and 5-fold increase in expression of ALP and OCN compared to undifferentiated mMSCs (Supplemental Fig. 2B and C).
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10

Western Blotting Analysis of Apoptosis Markers

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The Western immunoblotting analyses were performed as described previously [57 (link)]. The membranes were incubated with primary antibodies (all from CST and in 1:1000 dilution; Cell Signaling, Danvers, MA, USA) overnight, including anti-AMPKα, anti-Atg7, anti-Beclin-1, anti-cleaved Caspase-3, anti-Caspase-3, anti-cleaved Caspase-9, anti-Caspase-9, anti-cleaved PARP, anti-PARP, anti-PRODH, and anti-GAPDH. The bands were visualized using 1-Step™ NBT/BCIP Substrate Solution (Thermo Fisher Scientific, Waltham, MA, USA), and their intensities were semi-quantitatively calculated with ImageJ software (https://imagej.nih.gov/ij/). Western immunoblotting analysis was performed at least in triplicate.
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