The largest database of trusted experimental protocols

71 protocols using rt pcr kit

1

Quantitative RT-PCR of HUVEC RNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total RNA of the HUVECS was extracted by TRIzol reagent. Reverse transcription was performed using a PrimeScript RT-PCR kit and Promega RT-PCR kit. The reaction conditions were initial denaturation at 94°C for 4 min, denaturation at 94°C for 40 s, annealing at 52°C for 40 s, and extension at 72°C for 40 s, with a total of 40 cycles. The qRT-PCR was performed on an ABI 7500 amplifier using SYBR Premix Ex Taq (Takara, Minato-ku, Tokyo, Japan). The PCR results were analyzed by the 2−ΔΔCt method. The PCR primers were designed and synthesized by Shanghai Sangon Biotech Company, with U6 as an internal reference.
+ Open protocol
+ Expand
2

Quantitative PCR Analysis of mRNA Levels

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA and cDNA were prepared from whole kidney samples using the SV Total RNA Isolation System (Promega, Madison, WI, USA) or cultured cells using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and RT-PCR kits (Promega, Madison, WI, USA). Real-time polymerase chain reaction (PCR) was performed in a 96-well optical reaction plate using SYBR Premix Ex TaqTMII. Reverse transcriptase polymerase chain reactions (RT-PCRs) were performed on Agilent Mx3000P QPCR Systems (Agilent, CA, USA). The levels of mRNA were normalized to the eukaryotic 18s rRNA expression level and calculated using the 2(−ΔΔCT) method.21 (link) The cycling conditions were as follows: initial denaturation at 95°C for 30 seconds, followed by 40 cycles at 95°C for 5 seconds, 60°C for 30 seconds, and 72°C for 30 seconds. Primer sequences are available upon request.
+ Open protocol
+ Expand
3

Evaluation of Naringin's Anti-Cancer Effects

Check if the same lab product or an alternative is used in the 5 most similar protocols
Naringin, 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT), propidium iodide (PI), and Trypan Blue were purchased from Beyotime Biotechnology (Shanghai, China). Fetal bovine serum (FBS), Dulbecco’s modified Eagle’s medium (DMEM), Lipofectamine 2000, and TRIzol were obtained from Invitrogen (Carlsbad, CA, USA). RT-PCR kits were obtained from Promega (Beijing, China). SYBR Premix Ex Taq reagents were obtained from TaKaRa (Dalia, China). Anti-Zeb1, anti-cyclin D1, anti-bcl-2, anti-MMP2, and anti-GAPDH antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). HRP-conjugated secondary antibody, BCA protein assay kit, and enhanced chemiluminescence (ECL) solution were purchased from Beyotime Biotechnology. All experiments were completed in the Central Laboratory of our hospital.
+ Open protocol
+ Expand
4

RNA Extraction and qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
After treatment, cells were lysed in the Trizol reagent (Invitrogen), and RNA was isolated according to the manufacturer’s instructions. The cDNAs for mRNA expression analysis were synthesized from total RNA using RT-PCR kits from Promega (Madison, WI). Real-time qPCR primers are listed in Supplementary Table 3. Some primers used for testing genes related to prostate development were based on a previous report51 (link).
+ Open protocol
+ Expand
5

Aluminum Chloride Protocol for RT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Aluminum chloride (AlCl3) was purchased from Sigma Aldrich Hyderabad; primers sequences obtained from Shanghai Sangon Biotech; RT-PCR kits by Promega, USA and Trizol reagent from Invitrogen, Germany.
+ Open protocol
+ Expand
6

Investigating Lung and Gastric Cancer Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human lung cancer A549 cell line and gastric cancer AGS cell line were purchased from ATCC; MTS, Rh-123 and RT-PCR kits were purchased from Promega; cisplatin was purchased from Sigma-Aldrich; EZH2 siRNA and related reagents were purchased from Cell Signaling Technology; PI cell cycle determination kit, Annexin V-FITC/PI kit and Caspase-3/8 activity kit were purchased from BD; various monoclonal antibodies were purchased from SantaCruz; ECL immunoblotting substrate kit was purchased from Millipore; flow cytometry: BD; microplate reader: Thermo; PCR instrument: Thermo.
+ Open protocol
+ Expand
7

RNA Isolation and Real-Time PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from cells with TRIzol and cDNA was synthesized using the RT-PCR kit from Promega. Three-step real-time polymerase chain reaction (PCR) was performed using the SYBR Green Mix (BioRad) and an iCycler Iqtm system (BioRad). The primer sequences used for PCR are described in Supplementary Table S1.
+ Open protocol
+ Expand
8

Mitochondrial Regulation and Autophagy Evaluation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human mRNA expressions of PGC-1α, TFAM, MFN1, MFN2, OPA1, LC3, GLO1, and β-actin were determined by real-time PCR analysis. The specific primers for these gene expression were shown in Table 1. After the drug treatment, cells were harvested and homogenized with Tripure isolation reagents (Roche Applied Science, Indianapolis, IN, USA), and 1 μg of total RNA was reverse transcribed to cDNA with an RT-PCR kit (Promega, Heidelberg, Germany) according to the manufacturer's instructions. Real-time PCR was performed in 96-well plates with the fast start SYBR green master. PCR products were measured with an ABI Quant Studio 5 (Thermo Fischer Scientific, Waltham, Massachusetts, USA).

qPCR primers.

Table 1
Forward primerReverse primer
GLO-15-CTAGAGTTCTTGGAATGACGC-35-ATTGTGGTAACTCTGGGTCTCA-3
PGC1α5-CCAAAGATGCGCTCTCGTTCA-35-CGGTGTCTGTAGTGGCTTGACT-3
TFAM5-GTGGTTTTCATCTGTCTTGGCA-35-TTCCCTCCAACGCTGGGCAATT-3
MFN-15- GGTGAATGAGCGGCTTTCCAA-35- TCCTCCACCAAGAAATGCAGG-3
MFN-25- CCTGCTCTTCTCTCGATGCAA-35-TGTCTTCAAGGAAGGTGGCG-3
OPA-15-TGGCCTGGATAGCAGAAAGG-35-AGGATGTCCTTAATTGGGGTCG-3
LC35-GCGAGTTACCTCCCGCAG-35-GTACCTCCTTACAGCGGTCG-3
β-actin5-CGGGGACCTGACTGACTACC-35-AGGAAGGCTGGAAGAGTGC-3
+ Open protocol
+ Expand
9

Quantitative Analysis of Osteogenesis Genes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from TM4, D1, ARflox/Y and AR-/Y;Prrx1::Cre PDCs cells using the TRIzol reagent (Invitrogen) according to the manufacturer’s instructions. cDNA was reversed transcribed from 2 μg mRNA using a Promega RT-PCR kit. For semi-quantitative analyses, PCR was performed on an Applied Biosystems GeneAmp PCR system Veriti 96-well Thermal cycler (27–35 cycles), and band intensities were compared during the linear portion of the amplification cycle. Quantitative PCR was performed on an Applied Biosystems 7500 Real-time PCR detection system using cDNA-specific gene primers and SYBR green master mix (Applied Biosystems). Gene expression levels were compared using the comparative cycle threshold method, with β-actin as input control.
For osteogenesis, microarray analyses were performed on an Applied Biosystems 7500 Real-time PCR detection system using a mouse osteogenesis PCR array kit (Qiagen). The mouse osteogenesis RT² Profiler PCR Array profiles the expression of 84 genes related to osteogenic differentiation. This array contains genes that function in the development of the skeletal system as well as in bone mineral metabolism, and includes growth factors and genes that mediate osteogenesis and related cell growth, proliferation, and differentiation processes. Also represented are ECM molecules and cell adhesion molecules involved in bone development.
+ Open protocol
+ Expand
10

Quantifying Rice Immune Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
To quantify the expression levels of marker genes (PAL4 and NAC4) after PAMP treatments, leaf discs of different transgenic rice plants were immersed in water containing either 100 nm flg22 or 8 nm chitin for 3 h, as described previously (Park et al., 2012). Total RNA was extracted with Trizol reagent (Invitrogen, Cat. No. 15596, Carlsbad, CA, USA) and subjected to first‐strand cDNA synthesis using a Promega RT‐PCR kit (Madison, WI, USA). qRT‐PCR was performed using an iQ5 real‐time PCR detection system (Bio‐Rad). The transcriptional levels were calculated by the relative 2−ΔCT method with the rice ubiquitin gene as an endogenous reference for normalization.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!