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335 protocols using ecl reagent

1

Western Blot Analysis of Adrβ2 in Tumor Tissues

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Total protein from tumor and normal adjacent tissues were isolated using RIPA buffer (Thermo Scientific) containing protease and phosphatase inhibitor cocktail (Thermo Scientific). Thirty micrograms of proteins were then allowed to resolve in an SDS-polyacrylamide gel electrophoresis gel and the resolved proteins were transferred onto a polyvinylidene difluoride membrane. The membrane was then incubated with the primary antibody against Adrβ2 (1 : 1000; rabbit; PA5-14117, ThermoFisher Scientific) for 1 h followed by goat anti-rabbit horseradish peroxidase (HRP) conjugate (1 : 3000; Biorad) and then developed using ECL reagent (Biorad). The membrane was also re-probed with β-actin antibody (1 : 2000; mouse; sc-47778, Santa Cruz Biotechnology) for 1 h followed by goat anti-mouse HRP conjugate (1 : 3000; 170-6516, Biorad) and then developed using ECL reagent. The blots were visualized and images captured, using a Geldoc (Biorad).
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Protein Expression Analysis in CRC

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Total proteins were extracted from CRC tissue and cell samples by the RIPA reagent obtained from Sigma, USA, and separated using 10% SDS-PAGE. The isolated proteins were transferred into PVDF membranes followed by 5% nonfat milk incubation to minimize the noise. Next, the membranes were immersed in milk containing primary antibodies against SOCS3 (Rabbit, 1:2000, ab16030, Abcam, UK), CD133 (Rabbit, 1:1000, ab216323, Abcam), SOX2 (Mouse, 1:2000, ab171380, Abcam), OCT4 (Rabbit, 1:5000, ab109183, Abcam), AKT (Rabbit, 1:500, ab8805, Abcam), STAT3 (Mouse, 1:5000, ab119352, Abcam), p-AKT (Rabbit, 1:1000, ab38449, Abcam), p-STAT3 (Rabbit, 1:5000, ab76315, Abcam), and GAPDH (Rabbit, 1:3000, ab124905, Abcam), and incubated overnight. After excess primary antibodies were washed off by PBS, the membranes were probed by HRP-conjunct secondary antibodies, and the signals were visualized using the ECL reagent (Bio-Rad).
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Quantitative Western Blot Analysis

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Cell lysates were isolated by RIPA lysis buffer (50 mM Tris pH 7.4, 150 mM NaCl, 1 mM EDTA, 1% Triton x-100, 1% Na-Doc, 0.1% SDS) supplemented with protease inhibitor cocktail (Roche). Cell extracts were quantitated using a BCA protein assay kit (Thermo). Western blot analysis was performed standard techniques for Twist1 (Abcam, ab50887, 1:1000, Cambridge, MA), Prrx1 (Origene, TA803116, 1:1000, Rockville, MD, USA), TNC (Genetex, GTX62552, 1:1000, USA) and alpha-tubulin (Santa Cruz, TU-02, 1:3000, Dallas, TX). Protein detection for Western blotting was performed using ECL reagent (#1705061, Bio-Rad). The antibodies are described in Supplementary Table 1. Uncropped images of the gels are shown in Supplementary Fig. 11.
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Western Blot Analysis of AMPK, BDNF, and CREB

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Western blot analysis was performed, as previously described [24 (link)]. Initial cell lysis was used by RIPA buffer and protease/phosphatase inhibitors. Equal amounts of protein samples (25 or 50 µg) were separated to sodium dodecyl sulfate polyacrylamide gel and transferred to polyvinylidene difluoride membranes by electrophoresis. The membranes were washed with 0.1% Tween 20 in TBS buffer (TBST) and were reactivated in blocking solution (5% bovine serum albumin (BSA)). The membranes were then incubated with anti-AMPK (Cell signaling; Danvers, MA, USA, 2532), phospho-AMPK (Cell signaling; 2535), brain-derived neurotrophic factor (BDNF, Abcam; Cambridge, UK, ab108319), tropomyosin receptor kinase B (TrkB, Cell signaling; 4603), phospho-TrkA (Tyr785)/TrkB (Tyr816) (Cell signaling; 4168), cAMP response element-binding protein (CREB, Cell signaling; 9197), phospho-CREB (Ser133) (Cell signaling; 9198), or β-actin (Santa Cruz Biotechnology; Dallas, TX, USA, sc-47778HRP) overnight at 4 °C. All primary antibodies except β-actin (1:5000 dilution) were used at a 1:1000 dilution. After repeated washing times with TBST, the membranes were reacted with HRP-conjugated secondary antibodies (1:5000 dilution). Protein detection was performed using an ECL reagent (Bio-Rad Laboratories, Hercules, CA, USA) and captured by Solo6S EDGE (Vilber Lourmat Sté, Collégien, France).
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Western Blot Analysis of FGFR1 Protein

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Protein lysates from LV tissue were prepared using RIPA buffer according to standard protocols. Primary antibodies against FGF receptor 1 (FGFR1) (rabbit polyclonal IgG, D8E4, Cell Signalling) and GAPDH (Millipore) were used. After washing, membranes were incubated with horseradish peroxidase-conjugated secondary antibodies (Amersham Life Sciences), and bound antibody was detected using ECL reagent (Bio Rad). Quantification of Western blots was performed using ImageJ software. Protein expression was normalized to the expression of GAPDH.
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6

Standardized KOK Extraction Protocol

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M199 medium was purchased from Gibco Industries, Inc. (Auckland, NZ). Phosphate-buffered saline (PBS), sodium chloride (NaCl), bovine serum albumin (BSA), hematoxylin, and eosin were purchased from Sigma-Aldrich (St. Louis, MO, USA). Tetramethylethylenediamine, protein assay kit, tween 20, ammonium persulfate, acrylamide, ECL reagent, and skim milk were purchased from Bio-Rad Lab. (Hercules, CA, USA). B-cell lymphoma-associated X protein (Bax), cytochrome c, and β-actin antibodies were obtained from Santa Cruz Biotechnology, Inc., (Delaware Avenue, CA, USA). Cleaved caspase-3 and HRP-conjugated secondary antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). The total glutathione (GSH) assay kit and the oxidized glutathione (GSSG)/GSH Quantification Kit were purchased from Dojindo Molecular Tech. (Tokyo, Japan). KOK was the same as that used in the previous study [14 (link)] in which chemical profiling and standardization of KOK had been performed and KOK (Lot No. SU12) was donated by Kwang Dong Pharmaceutical Co. (Pyongtaek, Korea).
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7

Western Blot Analysis of GLUT1

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Whole cell lysate or subcellular fractionation protein samples were analyzed by Western blot. 20ug of protein was added to 2x Laemelli sodium dodecyl sulfate (SDS) sample buffer, boiled at 99 degrees Celsius for 10 min, and loaded onto 4–20% Mini-PROTEAN TGX Stain-Free Protein Gels (#456–8094, Bio-Rad). Following separation, the proteins were transferred to nitrocellulose membranes (#1704156, Bio-Rad) using the Trans-Blot Turbo Transfer System (Bio-Rad), blocked for 1 hr with TBS-T containing 5% nonfat dry milk, and probed using GLUT1 (NB110–39113SS, Novus Biologicals, Littleton, CO) antibody for 12 hrs at 4 degrees Celsius, and a goat anti-rat HRP secondary antibody (#170–6515, Bio-Rad) (1:4000) for 1.5 hr at room temperature. The blot was developed by exposure to ECL reagent (#102031089, #102031090, Bio-Rad) and visualized with the ChemiDoc XRS+ System (Bio-Rad). Bands were compared to molecular weight marker protein (#161–0374, Bio-Rad). For GLUT1, intensity of bands for proteins of interest were analyzed with Image Lab Software (Bio-Rad) and normalized to total protein per Bio-Rad Gel Protocol.
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8

Protein Expression Analysis by Immunoblotting

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The right parts of brain tissue were extracted in RIPA buffer plus protease/phosphatase inhibitors. Samples were immunoblotted as previously described [32 (link)]. Protein detection was carried out using an ECL reagent (Bio-Rad Laboratories) and visualized by ChemiDoc (Bio-Rad Laboratories). For quantification of relative protein expression, the optical density of the protein band of interest was normalized to the optical density of β-actin detected on the same membrane.
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9

Immunoblotting Assay for AR Expression

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AR expression was analyzed using a previously described immunoblotting assay [44 (link), 45 (link)]. Briefly, protein extracts were subjected to SDS-PAGE and then transferred to a PVDF membrane (BioRad). The membrane was then incubated with the appropriate antibodies. After incubation, ECL reagent (BioRad) was applied to the membrane, and the signals were detected by Chemidoc XRS+ (BioRad) with a charge-coupled device (CCD) camera.
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10

Western Blot Analysis of Protein Expression

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After transfection, NPCs were lysed with SB (2x SDS-PAGE sample buffer) as previously reported [22 (link)]. Isolated cortical tissues were homogenized with RIPA buffer, and the extracted lysates were mixed with SB. Protein concentrations were calculated by BCA assay and 50 µg of proteins for each sample was run in the 10% SDS-PAGE. Polyvinyl alcohol (1%, in PBS) was used for blocking the nitrocellulose membranes containing transferred proteins. The blocked membranes were treated with primary antibody and incubated for 16 hour at 4℃. After incubation for primary antibody, a peroxidase-conjugated secondary antibody (Santa Cruz, CA), with the same species as the primary antibody used, was incubated to the membranes for 2 hour at RT (room temperature). Each band of interest was detected using the ECL™ reagent and visualized by Bio-Rad image analyzer (Bio-Rad, Hemel Hampstead, UK). The loading control used was β-actin for all proteins of interest.
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