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107 protocols using cd45 apc cy7

1

Multiparameter Flow Cytometry of Lymphocytes

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Lymphocytes from local lymph nodes were collected and stained with different fluorescence-labeled antibody cocktails as we previously described [27 (link)] to detect the percentages of CD4+ T cells (CD3-FITC, CD4-PE), CD8+ T cells (CD3-FITC, CD8a-APC), IFN-γ secreting cells (CD3-FITC, CD8-APC, IFN-γ-PE-Cy5-5), Tfh (T follicular helper) cells (CD45-APC-Cy7 (BD Pharmingen, San Diego, CA, USA), CD4-FITC (BD Pharmingen, USA), CD185-APC, PD-1-Pacific Blue (BD Pharmingen, USA)), germinal center (GC) B cells (B220-APC-Cy7, CD45-APC-Cy7 (BD Pharmingen, USA), CD95-PE, GL-7-APC), and plasma cells (B220-Pacific Blue, CD27-PE-Cy7, CD138-PE). Except where indicated, the remaining antibodies were purchased from BioLegend, San Diego, CA, USA. The stained cells were assessed by flow cytometry (BD LSRFortessa TM Cell Analyzer, San Jose, CA, USA), followed by FlowJo software analysis.
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2

Flow Cytometry Analysis of Immune Cell Subsets

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SVF pellets were washed with PBS/2% FBS, incubated with Fc Block (BD Bioscience, San Jose, CA, USA) for 15 min and then stained with the following conjugated antibodies (30 min at 4 °C in the dark): CD45-APC-Cy7, CD3-APC, CD19-APC, NK1.1-APC, F4/80-PE-Cy7, CD11b-PerCP-Cy5.5 (all from BD Bioscience), and TER119-APC and CD11c-PE (eBioscience, San Diego, CA, USA) for ATM, CD45-APC-Cy7, CD19-PE, CD4-V500, CD8a-PerCP-Cy5.5, Gr1-APC (BD Bioscience), and CD3-eFlour450, NK1.1-PE-Cy7, TER119-APC, F4/80-APC (eBioscience) for lymphocyte population. After incubation, cells were washed and resuspended in PBS/2% FBS and then analyzed by FACS Canto II (BD Biosciences) and FlowJo software (version 10, Tree Star Inc., Ashland, OR, USA). As described previously [25 (link)], ATM were defined as CD45+, CD3, CD19, NK1.1, TER119, CD11b+ and F4/80+. T cells (CD19CD3+NK1.1), B cells (CD19+CD3), and NK cells (CD19CD3NK1.1+) were gated after excluding the myeloid lineage (Gr1+, F4/80+) and red blood cells (TER119+) among immune cells (CD45+).
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3

Comprehensive Immunological Assays for In-Depth Analysis

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Gum arabic, activated carbon, 2,7-dichlorofluorescein diacetate (DCFDA), toluidine blue, protease inhibitor cocktail tablets, phosphatase inhibitor cocktail tablets, MILLIPLEX MAP Mouse Cytokine/Chemokine Magnetic Bead Panel were purchased from Merck KGaA (Darmstadt, Germany). 25% Aqueous Solution Glutaraldehyde, Paraformaldehyde, Sorensen's Phosphate Buffer, 2% Aqueous Solution Osmium Tetroxide, Ethyl Alcohol, Acetone, Araldite, Dibutyl phthalate (DBP) were purchased Electron Microscopy Sciences (Hatfield, USA). Leukocyte Activation Cocktail with BD GolgiPlug™, FACS antibodies include anti-mouse I-A/I-E-BV510, IgG1-BB700, IgM-BV605, IgE-BV786, IgD-BV711, CD1d-BV421, CD5-PE, CD45-BUV395, CD19-APC, CD45R/B220-BUV496, CD45-APC-Cy7, CD3e-FITC, CD4-V450, CD8-BV510, CD25-BV605, IL-4-PE-Cy7, IFN-γ-PE, FoxP3-AF647, CD103-BUV395, F4/80-BV711, CD80-BV650, CD11b-BV510, Ly6-G-PerCP Cy5.5, PE-Ly6-C, CD45-APC-Cy7, CD11c--AF700 were purchased from BD (Heidelberg, Germany); Another FACS antibody Anti-mouse-IL-17A-BV650 was purchased from eBioscience (Frankfurt am Main, Germany). Anti-mouse HMGB1, Anti-mouse phospho-p65, anti-mouse phospho-p38, anti-mouse GAPDH and anti-rabbit IgG HRP were obtained from Cell signaling Technology (Frankfurt am Main, Germany). IgE and histamine ELISA kits were purchased from Abcam (Berlin, Germany).
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4

Multicolor Flow Cytometry for Immune Cell Profiling

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BM cells were incubated with Fc Block (BD Bioscience) for 15 min, and then stained with the following conjugated antibodies (30 min at 4°C in the dark): CD45-APC-Cy7, NK1.1-APC, CD3-APC, CD19-APC, CD11b-PerCP-Cy5.5, Ly6C-FITC (all from BD Bioscience), TER119-APC, Ly6G-eFluor450 (eBioscience) for neutrophil and monocyte populations, CD45-APC-Cy7, CD19-PE, CD4-V500, CD8-PerCP-Cy5.5, Gr1-APC (BD Bioscience), and CD3-eFlour450, NK1.1-PE-Cy7, TER119-APC (eBioscience) for lymphocyte population. After antibody staining, the cells were incubated with 7-AAD for 5 min at room temperature as a viability dye for dead cell exclusion and analyzed in the presence of AccuCheck counting beads by FACSSymphony A3. The data were further analyzed by using the FlowJo software.
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5

Evaluating MSC Induction of Tregs

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To assess the capacity of MSCs to induce the generation of T-regulatory (Treg) cells, PBMC-MSC cocultures have been set up. In short, 500 × 103 PBMCs from five different donors obtained by Ficoll gradient centrifugation were plated in the presence of 50,000 allogeneic MSCs in RPMI 10% FBS with IL-2300 U/ml in a 24-multiwell flat-bottomed plate for 1 week of culture [36 (link)]. At day 7, PBMCs were harvested and analyzed by flow cytometry after incubation with the following conjugated monoclonal antibodies: CD25 FITC, CD127 PE, CD4 APC, CD3 PECy7 and CD45 APCCy7 (Becton Dickinson). Treg cell induction by MSCs was evaluated as the percentage of CD25High/CD4+/CD127Low/− PBMCs [37 (link)].
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6

Isolation and Characterization of Immune Cells from Mouse Liver

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Immune cells were isolated from mouse liver, as described previously.1 (link),27 (link) Immune cells were stained with CD45-APC-Cy7 (Becton Dickinson, Franklin Lakes, NJ), CD11b-PE (Becton Dickinson), F4/80-FITC (Miltenyi Biotec), and Ly6C-Pacific blue (MACS). Flow cytometry was carried out using BD LSR-Fortessa. Analysis was performed using FlowJo software (FlowJo 10.8.1, Ashland, OR).
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7

Multi-color Flow Cytometry Analysis

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Freshly BM and PB samples were stained with suitable conjugated antibody: PE-LIGHT (R&D Systems), CD45-APC-Cy7, FITC-CD8, FITC-CD4, Pe-Cy-5-CD14 and FITC-CD16 (Becton Dickinson, Milan, Italy). Flow cytometry analysis was performed on a FACSCantoTM II or BD Accuri™ C6 flow cytometer (Becton Dickinson Immunocytometry System, Mountain View, CA, USA). Positivity area was determined using an isotype-matched mAb, and a total of 2000 events for each cell sub-population was acquired.
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8

Single-cell Isolation and Characterization

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Generation of single-cell suspension was performed as described in Llorens-Bobadilla et al.6 (link) Cells were stained with the following antibodies: O4-allophycocyanin (APC) and O4-APC-Vio770 (Miltenyi; diluted 1:50), Ter119-APC-Cy7 (BioLegend; 1:100), CD45-APC-Cy7 (Becton Dickinson [BD]; 1:200), GLAST (ACSA-1)-phycoerythrin (PE; Miltenyi: 1:20), CD9-eFluor450 (eBioscience; 1:300), Alexa647::EGF (Life Technologies; 1:100), polysialylated neuronal cell adhesion molecule (PSA-NCAM)-PE-Vio770 (Miltenyi; 1:75), Prominin1- peridinin-chlorophyll-protein PerCP-eFluor 710 (eBioscience; 1:75), CD24-PE-Cy7 (eBioscience; 1:75), and Sytox Blue (Life Technologies; 1:1,000). For RNA-seq, cells were directly sorted into 100 μL of the PicoPure RNA Isolation Kit (Thermo Fisher Scientific) extraction buffer. For ex vivo transduction, NSCs were sorted into growth factor-free Neurobasal medium (NBM).
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9

Surface Staining of Immune Cells

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For surface staining, single-cell suspensions prepared from the spleens of hu-mice or total blood cells collected in EDTA-coated tubes were stained for surface markers and analyzed on a BD LSRFortessa Beckton-Dickinson). Human CD11c-PacBlue, CD45-AF700, CD45-APC-Cy7, HLA-DR-PeCy7, CD40-PeCF, CD19-PeCy5, CD19-APC, CD19-PacBlue, CD27-APC, IgG-PeCy5, IgG-PercpCy5.5, IgD-FITC, IgM-FITC, CD3-APC-H7, CD3-FITC, CD14-FITC, CXCR5-AF488, and streptavidin-PE were purchased from Becton-Dickinson, whereas human CCR7-PacBlue, CD45RA-FITC, IgM-PacBlue, and ICOS-APC were purchased from Biolegend. Pacific orange-conjugated anti-mouse CD45, PE/Texas red-conjugated anti-human CD4, and the LIVE/DEAD Fixable Aqua (LD7) Dead Cell Stain Kit were purchased from Invitrogen. Data were analyzed using FlowJo software (FlowJo, LLC).
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10

Assessing Immunomodulatory Potential of MSCs

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In order to assess the immunomodulatory potential of MSCs in both culture conditions, a mixed leukocyte reaction (MLR) was performed. Peripheral blood mononuclear cells (PBMCs) from five different donors were obtained by Ficoll (Lymphosep, Lymphocyte Separation Media; BioWest) gradient centrifugation and resuspended in RPMI1640 medium (Euroclone) supplemented with 10% FBS.
Stimulator mononuclear cells (S) were irradiated at 60 Gy before being cultured with responder PBMCs (R). Then 200 × 103 responders and 100 × 103 stimulators were mixed with different concentrations of MSCs to obtain different concentration ratios (1:5, 1:10, 1:20, 1:100) in flat-bottomed 96-well plates (Corning) for 6 days. As controls, a polyclonal stimulation with purified anti-CD3/28 antibodies (BD Pharmingen) was also performed on PBMC responders in the presence of MSCs. Proliferation was measured on day 6 by carboxyfluorescein diacetate succinimidyl ester (CFDA-SE) (Vybrant CFDA SE Cell Tracer Kit; Thermofisher) labeling of responder PBMCs. A FACS analysis on flow cytometry was performed on responder PBMCs after incubation with the following conjugated monoclonal antibodies: CD25 PE, CD45 APCCy7, CD3 APC and HLA-DR PECy7 (Becton Dickinson). The immunomodulatory effect is evaluated as a percentage of proliferation (% CFDA-SE-positive cells) in the presence/absence of MSCs on 7-AAD CD45/CD3+ cells.
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