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24 protocols using chemostar imager

1

Western Blotting and BMP2 ELISA Protocol

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Western blots were generated by the semi-dry method. Protein lysates from cell lines were prepared using SIGMAFast protease inhibitor cocktail (Sigma, Taufkirchen, Germany). Proteins were transferred onto nitrocellulose membranes (Bio-Rad, München, Germany) and blocked with 5% dry milk powder dissolved in phosphate-buffered-saline buffer (PBS). The following antibodies were used: alpha-Tubulin (Sigma, #T6199), IRX1 (Biozol, Eching, Germany, #DF3225), and IRX3 (Biozol, #MBS8223417). For loading control, blots were reversibly stained with Poinceau (Sigma) and the detection of alpha-Tubulin (TUBA) was performed thereafter. Secondary antibodies were linked to peroxidase for detection by Western-Lightning-ECL (Perkin Elmer, Waltham, MA, USA). Documentation was performed using the digital system ChemoStar Imager (INTAS, Göttingen, Germany).
The enzyme-linked immunosorbent assay (ELISA) was used to quantify BMP2 protein levels in the supernatant of cell cultures. In addition, 2 × 106 cells were cultured in 2 mL of fresh medium in a 24-well plate. After 24 h, 1 of mL medium was harvested and frozen in aliquots. Quantification was performed using the Quantikine ELISA BMP-2 kit (R & D Systems, #DBP200), as described by the company. Two biological replicates were analyzed in triplicate.
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2

Western Blot Analysis of NF-kappa B Proteins

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Western blots were generated by the semi-dry method, and protein lysates from cell lines were prepared using SIGMAFast protease inhibitor cocktail (Sigma). Proteins were transferred onto nitrocellulose membranes (Bio-Rad, München, Germany) and blocked with 5% dry milk powder dissolved in phosphate-buffered saline buffer (PBS). The following antibodies were used: alpha-Tubulin (Sigma), NFKB1 (R&D Systems, Wiesbaden, Germany), and NFKB2 (Abcam, Cambridge, UK). The used antibodies were diluted as follows: alpha-Tubulin (TUBA) 1:1000, NFKB1 1:1000, NFKB2 1:500. For loading controls, blots were reversibly stained with Poinceau (Sigma), and detection of TUBA was performed thereafter. Secondary antibodies were linked to peroxidase for detection by Western-Lightning-ECL (Perkin Elmer, Waltham, MA, USA). Western blot analyses were performed twice. Documentation was performed using the digital system ChemoStar Imager (INTAS, Göttingen, Germany).
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3

Protein Extraction and Immunoblotting Protocol

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Preparation of cell lysates, extraction of proteins, and immunoblotting were carried out as described earlier (32 (link), 34 (link)). Proteins were separated on TRIS-glycine gels (7.5% for NOS2 and 12% for Arginase 1) and transferred to PVDF membranes. Staining with appropriate primary and secondary antibodies was followed by signal visualization using the Chemo Star Imager (Intas Science Imaging Instruments, Göttingen, Germany). Densitometry of signals was done using ImageJ (Version 1.52a; Rasband, W., ImageJ, National Institutes of Health, USA, https://imagej.nih.gov/ij/).
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4

Western Blot Analysis of Cellular Proteins

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Western blots were generated by the semi-dry method. Protein lysates from cell lines were prepared using SIGMAFast protease inhibitor cocktail (Sigma, Taufkirchen, Germany). Proteins were transferred onto nitrocellulose membranes (Bio-Rad, München, Germany) and blocked with 5% dry milk powder dissolved in phosphate-buffered-saline buffer. The following antibodies were used: alpha-Tubulin (T6199, Sigma), VENTX (PA5-21006, Invitrogen, Darmstadt, Germany), ERK (sc-94, Santa Cruz Biotechnology, Heidelberg, Germany), and phospho(P)-ERK (sc-7383, Santa Cruz Biotechnology). For loading controls, blots were reversibly stained with Poinceau (Sigma) and detection of alpha-Tubulin (TUBA) performed thereafter. Secondary antibodies were linked to peroxidase for detection by Western-Lightning-ECL (Perkin Elmer, Waltham, MA, USA). Documentation employed the digital system ChemoStar Imager (INTAS, Göttingen, Germany).
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5

Immunoblotting Analysis of MAP1LC3B Lipidation

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For immunoblotting, cells were lysed at the indicated time points as described earlier [1,94]. In order to assess the lipidation status of MAP1LC3B, we used Mini-PROTEAN® TGXTM gradient gels from 4% – 20% (Bio-RAD, 456–1094) for sodium dodecyl sulfate polyacrylamide gel electrophoresis and, for blotting, polyvinylidene difluoride membranes (Immobilon®-PSQ, Millipore, ISEQ00005). After staining with appropriate antibodies, signals were visualized by the Chemo Star Imager (Intas Science Imaging Instruments, Göttingen, Germany). Densitometry of western blots was determined via ImageJ measurements (Version 1.50b; Rasband, W.S., ImageJ, U. S. National Institutes of Health, https://imagej.nih.gov/ij/).
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6

Western Blotting of Cell Lysates

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Western Blots were performed by the semi-dry method. Protein lysates from cell lines were prepared using SIGMAFast protease inhibitor cocktail (Sigma, Taufkirchen, Germany). Proteins were transferred onto nitrocellulose membranes (Bio-Rad, Munich, Germany) and blocked with 5% dry milk powder dissolved in phosphate-buffered saline (PBS) buffer. The following antibodies were used: alpha-tubulin (Sigma, #T6199), GATA1 (Cell Signaling, Danvers, MA, USA, #D52H6), SMAD1 (Santa Cruz Biotechnology, Heidelberg, Germany, #sc-7965), TBX1 (Origene, Rockville, MD, USA#TA347536), TMEM38A (Santa Cruz Biotechnology, Heidelberg, Germany, #sc-390054), NAV1 (MyBioSource, San Diego, CA, USA, #MBS9419483). For loading control, blots were reversibly stained with Ponceau (Sigma); the detection of alpha-tubulin (TUBA) was performed thereafter. Secondary antibodies were linked to peroxidase for detection by Western Lightning ECL (Perkin Elmer, Waltham, MA, USA). Documentation was performed using the digital system ChemoStar Imager (INTAS, Göttingen, Germany).
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7

Protein expression analysis by Western blot

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Western blots were generated by the semi-dry method. Proteins obtained from cell line lysates using SIGMAFast protease inhibitor cocktail (Sigma) were transferred onto nitrocellulose membranes (Bio-Rad, München, Germany) and blocked with 5% dry milk powder dissolved in phosphate-buffered-saline buffer (PBS). The following antibodies were used: alpha-Tubulin (Sigma), AUTS2 (Origene), SMAD1 (Santa Cruz Biotechnology, Heidelberg, Germany), STAT5 (Santa Cruz Biotechnology), phospho-STAT5 (Cell Signaling Technology, Danvers, MA, USA). For loading control the blots were reversibly stained with Poinceau (Sigma) and then detection of alpha-Tubulin (TUBA) or SMAD1 was performed. Secondary antibodies were linked to peroxidase for detection by Western-Lightning-ECL (Perkin Elmer, Waltham, MA, USA). Documentation was performed using the digital system ChemoStar Imager (INTAS, Göttingen, Germany).
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8

Western Blot Protein Detection Protocol

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Western blots were generated by the semi-dry method. Proteins obtained from cell line lysates using SIGMAFast protease inhibitor cocktail (Sigma) were transferred onto nitrocellulose membranes (Bio-Rad, München, Germany) and blocked with 5% dry milk powder dissolved in phosphate-buffered-saline buffer (PBS). The following antibodies were used: alpha-Tubulin (Sigma), and SIX1 (Novus Biologicals Europe, Cambridge, UK). For loading control the blots were stained with Poinceau (Sigma) and then detection of alpha-Tubulin (TUBA) was performed. Secondary antibodies were linked to peroxidase for detection by Western-Lightning-ECL (Perkin Elmer, Waltham, MA, USA). Documentation was performed using the digital system ChemoStar Imager (INTAS, Göttingen, Germany).
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9

Western Blot Analysis of Cell Lysates

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Western blots were generated by the semi-dry method. Protein lysates from cell lines were prepared using SIGMAFast protease inhibitor cocktail (Sigma). Proteins were transferred onto nitrocellulose membranes (Bio-Rad, München, Germany) and blocked with 5% dry milk powder dissolved in phosphate-buffered-saline buffer (PBS). The following antibodies were used: alpha-Tubulin (Sigma, #T6199), PBX1 (LifeSpan Biosciences, Eching, Germany, #LS-C133363), and NFIB (Novus Biologicals, Abingdon, UK, #NBP1-81000). For loading control blots were reversibly stained with Poinceau (Sigma) and detection of alpha-Tubulin (TUBA) performed thereafter. Secondary antibodies were linked to peroxidase for detection by Western-Lightning-ECL (Perkin Elmer, Waltham, MA, USA). Documentation was performed using the digital system ChemoStar Imager (INTAS, Göttingen, Germany).
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10

Protein Extraction and Immunoblotting

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Extraction of proteins, preparation of cell lysates, and immunoblotting were performed as described earlier (9 (link), 30 (link)). Signals were visualized by the Chemo Star Imager (Intas Science Imaging Instruments, Göttingen, Germany) or the ChemiDoc XRS+ System in combination with Image Lab Software (Bio-Rad, München, Germany). Images were processed with Adobe Photoshop CS6 software (Adobe Systems, San Jose, CA).
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