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25 protocols using nerve growth factor (ngf)

1

Western Blot Analysis of Protein Samples

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Protein form treated or transfected cells were collected and subsequently measured using BCA Protein Assay Kit (Solarbio, Beijing, China). Then, each protein sample was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred onto polyvinylidene difluoride membranes (Roche Diagnostics, Indianapolis, IN, USA). After that, the membranes were blocked with 5% BSA for 1 h and then incubated with the primary antibody solution (STAT3, NGF, NT-3, S100β, P75, or β-actin; Abcam, Cambridge, MA, USA) at 4 °C overnight. The blots were probed by horseradish peroxidase-conjugated secondary antibody solution (Abcam) for 1 h. Finally, protein bands were visualized using PierceTM ECL western blotting substrate (Thermo Fisher Scientific). Captured the signals using films in dark room.
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2

Cardiac Protein Expression Analysis

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Ventricles were harvested quickly, washed with saline, and stored at −80 °C until the next step. Proteins of frozen tissues were lysed with lysis buffer (20 mM Tris-HCl, 1 mM Na3VO4, and 5 mM NaF), then separated by 8–12% SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes. After 5% skimmed milk blocking, PVDF membranes were incubated with primary antibodies overnight, such as Cav1.2 (1:1000; Abcam), NGF (1:200; Abcam), Kv4.2 (1:1000; Abcam), and GAPDH (1:10,000; Abcam), followed by incubation with appropriate secondary antibody (peroxidase-coupled goat anti-rabbit or goat anti-mouse, 1:1000, Abcam). Membranes were analyzed by an Image-Quant ECL Imager (GE Healthcare, Chicago, IL).
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3

Validating Antibodies for Immunohistochemistry

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To validate antibodies for NGF and HO1 used in immunohistochemical staining, we performed western blotting analysis. Four human gastric cancer cell lines (MKN28, MKN45, KATO-III, and NCI-N87) were purchased from the Korean Cell line Bank (KCLB, Seoul, Korea) and cultured in RPMI1640 media. The cells were lysed with PRO-PREP Protein Extraction Solution (iNtRON Biotechnology Inc., Seongnam, Korea). Western blot was performed with primary antibodies for the NGF (Abcam, Cambridge, UK), HO1 (Enzo Life Sciences, Farmingdale, USA), and actin (Sigma, St. Louis, USA).
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4

Neurobiological Assays in Cognitive Studies

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The following reagents were obtained from Sigma (St. Louis, MO, USA); acetic acid, bicinchoninic acid solution, bovine serum albumin, copper(II) sulfate pentahydrate, Cresyl violet acetate, 3,3′-diamino-benzidine (DAB), radioimmunoprecipitation assay (RIPA), scopolamine hydrobromide, skim milk, and 9-amino-1,2,3,4-tetrahydroacridine hydrochloride hydrate (THA). The CREB, phospho-CREB, NGF, BDNF, beta-actin, and secondary horseradish peroxidase (HRP)-conjugated antibodies used for western blotting were obtained from Abcam (Cambridge, MA) and Santa Cruz Biotechnology (Santa Cruz, CA); the doublecortin (DCX), biotinylated secondary antibodies, and avidin-biotin peroxidase complex used for immunohistochemical staining were obtained from Abcam (Cambridge, MA), Santa Cruz Biotechnology (Santa Cruz, CA) and Vector Laboratories (Burlingame, CA).
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5

Quercetin Neuroprotective Mechanism Evaluation

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Quercetin (CAS NO: 117-39-5, purity > 95%, Figure 1A) was purchased from Sigma-Aldrich. Kits for detecting SOD and MDA were purchased from Nanjing Jiancheng Bioengineering Institute. The antibodies for PSD93, PSD95, SIRT1, Caspase3, Bax, Bcl2, PERK, P-PERK, eIF2α, P-eIF2α, IRE-1α, P-IRE-1α, BIP, PDI were provided by Cell Signaling Technology (MA, USA). Anti-β-actin, BDNF, NGF, ATF6 were purchased from Abcam, Inc (Cambridge, England).
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6

Comprehensive Protein Profiling Protocol

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β-catenin [Abcam; (E247) ab32572]; ph-S675-β-catenin (Cell Signaling Tech; #4176S); TCF4 (Cell Signaling, #C48H11), p300 (Invitrogen; PA1-848), p21 (Santa Cruz; sc-6246), HACE1 (Abcam; ab133637), cdc2 (Santa Cruz; sc-954), β-actin (Sigma; A5316). GPC3 (Abcam, ab216606), β-III tubulin (Abcam, ab18207), NeuN (Abcam, ab104225), NGF (Abcam, ab52918), α-SMA (Cell Signaling #14968), Collagen I polyclonal (Invitrogen; sc: PA5 29569), ZBTB3 (Abcam, ab106536), and SRCAP (Abcam, ab219181).
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7

Molecular Signaling in Penile Tissue

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Animals were sacrificed by intraperitoneal injection with sodium pentobarbital (50 mg/kg), followed by bilateral thoracotomy. Penile midshaft tissues were freshly harvested and fixed [23 (link)], and immunofluorescence staining was performed as previously described [31 (link)]. The corpus cavernosum paraffin sections were immunostained with VEGF (diluted 1 : 200 Santa Cruz Biotechnologies, Santa Cruz, US), neuronal nitric oxide synthase (nNOS, diluted 1 : 200 Santa Cruz Biotechnologies, Santa Cruz, CA), brain-derived neurotrophic factor (BDNF, diluted 1 : 200; Abcam, Cambridge, UK), nerve growth factor (NGF, diluted 1 : 200; Abcam, Cambridge, UK), stromal cell-derived factor-1 (SDF-1 diluted 1 : 200; Abcam, Cambridge, UK), and neuron-specific β-III tubulin (diluted 1 : 200; Abcam, Cambridge, UK) and mounted with 4,6-diamidino-2-phenylindole (DAPI; Vector Laboratories Inc., Burlingame, CA) to stain the nuclei. The collagen and vascular smooth muscle was evaluated after tissue staining with the Masson trichrome technique using the method previously described [32 (link)]. Digital images were obtained using a Zeiss LSM 510 Meta confocal microscope (Zeiss, Oberkochen, Germany), and the mean intensity was calculated using ZEN 2009 (Zeiss).
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8

Cardiac Protein Expression Analysis

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Ventricles were harvested quickly, washed with saline, and stored at −80 °C until the next step. Proteins of frozen tissues were lysed with lysis buffer (20 mM Tris-HCl, 1 mM Na3VO4, and 5 mM NaF), then separated by 8–12% SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes. After 5% skimmed milk blocking, PVDF membranes were incubated with primary antibodies overnight, such as Cav1.2 (1:1000; Abcam), NGF (1:200; Abcam), Kv4.2 (1:1000; Abcam), and GAPDH (1:10,000; Abcam), followed by incubation with appropriate secondary antibody (peroxidase-coupled goat anti-rabbit or goat anti-mouse, 1:1000, Abcam). Membranes were analyzed by an Image-Quant ECL Imager (GE Healthcare, Chicago, IL).
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9

Cell Signaling Pathway Analysis

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The human PC cell lines AsPc‐1 and Panc‐1 were obtained from the American Type Culture Collection and cultured in DMEM supplemented with 10% foetal bovine serum (FBS) and 1% antibiotics/antimycotics in a humidified 5% CO2 atmosphere at 37°C. Antibodies against MMP‐9, vimentin, E‐cadherin, NGF, TrkA, p‐AKT, AKT, GSK and p‐GSK were purchased from Abcam. Recombinant NGF was obtained from R&D Systems.
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10

Pancreatic Cancer Cell Culture

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The human PC cell lines AsPc-1 and Panc-1 were obtained from the American Type Culture Collection (Manassas, VA) and cultured in DMEM supplemented with 10% fetal bovine serum (FBS) and 1% antibiotic/antimycotic in a humidified 5% CO2 atmosphere at 37°C. Antibodies against SHH, SMO, PTCH, Gli1, Gli2, NGF, BDNF, GDNF, TRPV1, SP and CGRP were purchased from Abcam, USA. Recombinant sonic hedgehog, NGF and BDNF were obtained from R & D Systems (Minneapolis, MN). Capsaicin was purchased from Sigma, USA.
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