The largest database of trusted experimental protocols

Sc 2054

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Sc-2054 is a laboratory equipment designed for general-purpose centrifugation applications. It is capable of handling a variety of sample sizes and types. The product specifications and technical details are available upon request.

Automatically generated - may contain errors

30 protocols using sc 2054

1

Validating Citrin and MCU Knockdown

Check if the same lab product or an alternative is used in the 5 most similar protocols
For KD validation, cells were seeded on 10 cm dishes, transfected with respective siRNAs and harvested 48 h post transfection. Rabbit polyclonal citrin antibody (Abcam, ab96303) at 1:1000 dilution and rabbit monoclonal MCU antibody (Cell Signaling Technology, D2Z3B, #14997) at 1:1000 dilution were used for immunoblotting. A 1:5000 dilution of goat anti-rabbit secondary antibody was used (Santa Cruz Biotechnology, sc-2054). For phosphorylated PDH assessment, cells on 10 cm dishes were incubated in experimental storage buffer for 20 min to adjust to room temperature, followed by 5 min incubation in 2 Ca2+ buffer. After, cells were either incubated in 2 Ca2+ buffer for 5 min, in 0 Ca2+ for 5 min, or in 0 Ca2+ buffer for 1 h. Following the incubation times, cells were washed with ice cold nominally Ca2+ free buffer and harvested on ice. Phosphorylated PDH was blotted with 1:1000 dilution of rabbit mAb P-PDH S293 (Cell Signaling Technology, E4V9L, #37115), and total PDH with 1:1000 dilution of rabbit mAb PDH (Cell Signaling Technology, C54G1, #3205). A 1:5000 dilution of goat anti-rabbit secondary antibody was used (Santa Cruz Biotechnology, sc-2054). Broad Range (10-250 kDa) Color Prestained Protein Standard ladder (NEB, P7719S) was used in all blots.
+ Open protocol
+ Expand
2

Recombinant CIDR Protein Production

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recombinant CIDR domains were produced as His6-MBP-TEV-PfEMP1 insert-StrepII-tagged proteins in pSHuffle Express (NEB) expression hosts as previously described (Avril et al., 2013 (link)). CIDR constructs were designed with similar domain boundaries using the varDom server (http://genome.cbs.dtu.dk/services/VarDom/) (Rask et al., 2010 (link)). The 25-2-4CIDRα1.1 domain was amplified from blood collected from an India patient using primers that target the flanking DBLα2 domain (5’ GYTCARAWTATTGCCAACCC) and DBLβ12 domain (5’ TAATCTTCTATKGGGATACCATTACA) in the DC8 cassette (Lavstsen et al., 2012 (link)). The sequences of recombinant proteins used in this study are provided in Table S1. Recombinant proteins were purified in a 2-step process using an amino-terminal His tag and a carboxy-terminal strepII tag. Purified proteins were analyzed by SDS-PAGE gels using GelCode Blue Protein Stain (Life Technologies) or Western analysis using a rabbit anti-StrepII primary antibody (A00626, Genscript) and goat anti-rabbit secondary antibody (SC-2054, Santa Cruz Biotechnology) following standard procedures. Purified proteins were stored at −80°C.
+ Open protocol
+ Expand
3

Immunodetection with Goat Anti-IgG HRP

Check if the same lab product or an alternative is used in the 5 most similar protocols
HRP goat anti-mouse IgG (RRID: AB_631736; 1:8000; sc-2055; Santa Cruz, Heidelberg, Germany).
HRP goat anti-rabbit IgG (RRID: AB_631748; 1:8000; sc-2054; Santa Cruz, Heidelberg, Germany).
+ Open protocol
+ Expand
4

Western Blot Analysis of Apoptosis Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot analysis was performed as previously described else where (Wang et al., 2017b (link), 2018 (link)). Granulosa cells were collected after treatment for 48 h and lysed in RIPA buffer (catalog number: 89900; ThermoFisher, Rochford, IL, USA), then denatured by boiling for 5 min with bromophenol blue and frozen at −80 °C. The proteins were separated by 12% polyacrylamide gel electrophoresis, and then transferred to polyvinylidene fluoride membrane (Millipore, Bedford, MA, USA). Firstly, the membrane were incubated with primary antibody: Bcl2 mouse monoclonal antibody (1:500, sc-7382; Santa Cruz, Dallas, TX, USA), Bax mouse monoclonal antibody (1:500, sc-20067; Santa Cruz, Dallas, TX, USA), caspase-3 rabbit polyclonal antibody (ab13847; Abcam, California, USA) and β-actin mouse monoclonal antibody (1:1000, SC-47778; Santa Cruz, Dallas, TX, USA). Later, the membrane was detected by incubation with HRP labeled goat anti-rabbit secondary antibody (SC-2054; Santa Cruz, Dallas, TX, USA) or goat anti-mouse secondary antibody (1:5000; SC-2005; Santa Cruz, Dallas, TX, USA), respectively. Finally, membranes was incubated with the Clarity Western ECL kit (catalog number: 170-5060; Bio-Rad Laboratories, Hercules, CA, USA), and scanned in a ChemiDocXRS chemiluminescent imaging system (Bio-Rad, Hercules, CA, USA).
+ Open protocol
+ Expand
5

Western Blot Analysis of FABP1 Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver tissues were homogenized using RIPA buffer (P0013B, Beyotime, Shanghai, China) with added phosphatase inhibitor cocktail (5870, Cell Signaling Technology, United States). The protein concentration was measured using a BCA Protein Quantification Kit (5000201, Bio-Rad, United States). Approximately 20 μg of protein was separated by electrophoresis on polyacrylamide gels and subsequently transferred to nitrocellulose membranes. After blocking for 30 min at room temperature, the membranes were incubated overnight at 4 °C with the following primary antibodies: anti-fatty acid binding protein 1 (FABP1) (1:1000; ab171739, Abcom, UK) and anti-GAPDH (1:1000; ABPR001, Goodhere Biotech, Hangzhou, China). Subsequently, the membranes were incubated for 1 h in goat anti-rabbit IgG-HRP secondary antibody (1:10,000, SC-2054, Santa Cruz Biotechnology, United States). Proteins were detected using enhanced chemiluminescence (ELC), and the quantification was performed using Image J software.
+ Open protocol
+ Expand
6

Western Blot Protein Detection Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed using standard procedures. Briefly, samples were loaded into wells in Tris-HCl gels and run at 60V for 10 min initially and then switched to 120V. Protein in the gel was then transferred onto nitrocellulose at 90 V for 2 hr. Membranes were then blocked for 1 hr in 5% non-fat dry milk (NFDM) in TBST, probed overnight at 4°C with primary antibody, rinsed 4 x 5 min in TBST, probed with appropriate secondary antibody for 1 hr at room temperature, and then rinsed in TBST 4 x 5 min. Primary antibodies included HIF1α (Novus Biologics, NB100–105), LDH-A (Santa Cruz sc-27230), IDH (Abcam, ab36329), phosphoglycerate mutase 1 (PGAM1) (Cell Signaling 7534S), cyclin D1 (Cell Signaling 2922), phospho Rb S780 (Cell Signaling 9307S), phospho acetyl CoA carboxylase (ACC) (Millipore 07–303), and ACC (Jackson 016–050–084). The secondary antibodies used with appropriate primary antibody included anti rabbit (Santa Cruz, sc-2054), anti mouse (Santa Cruz, sc-2055), or anti goat (Santa Cruz, sc-2056). Chemiluminescent detection was then performed using enhanced chemiluminescence (ECL) and was detected using autoradiography film. Western blots were analyzed using Image J. Ponceau red staining was used to correct for any variation in protein loading between samples. Values presented in graphs were normalized against the BSA group.
+ Open protocol
+ Expand
7

TRIM24 Knockdown in HCT116 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The lentiviruses were transduced into HCT116 cells for 5 days. Then cells in all three groups (Lv-shTRIM24, Lv-shCon, and Con) were subjected to protein extraction with cell lysis buffer (10 mM Tris-HCl, pH 7.4; 1 mM EDTA; 0.1% Triton X-100; and 0.1% SDS) by centrifugation. Before Western blot analysis, total protein concentration was examined by BCA protein assay (Pierce, Rockford, IL, USA). For electrophoresis, 30-µg cell extracts from three groups were mixed with sample buffer, respectively, separated by 10% SDS-PAGE gel, and wet-transferred to a polyvinylidene fluoride (PVDF) membrane. For immunoblotting, the specific primary antibodies against TRIM24 (14208-1-AP, Sigma, St. Louis, MO, USA) and GAPDH (Sc-32233, Santa Cruz, CA, USA) were incubated with the membrane overnight at 4°C. Goat anti-rabbit secondary antibody (SC-2054, Santa Cruz) was then used for 2-h incubation at room temperature. Immunoblots were visualized by using an enhanced chemiluminescence (ECL) kit (PE LifeScience).
+ Open protocol
+ Expand
8

Protein Fractionation and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The whole cell lysates were prepared by using RIPA Lysis and Extraction Buffer (Thermo Scientific, IL, USA) with Pierce Protease and Phosphatase Inhibitor Mini (Thermo Scientific, IL, USA). The fractionated lysates were prepared by using the Subcellular Protein Fractionation Kit for Cultured Cells (Thermo Scientific, IL, USA). Protein concentrations were measured using the Bio-Rad Protein Assay (Bio-Rad; CA, USA), and the concentration in individual samples was equalized before adding 4x Laemmli buffer to a final concentration of 1x. Equal amounts of protein (50 μg whole cell lysates, 45 μg fractionated lysates) were run on 10% SDS-PAGE gels and then transferred with iBlot 2 Transfer Stacks and iBlot 2 Dry Blotting System onto PVDF membranes (Invitrogen, Thermo Scientific, IL, USA). After one hour 5% milk block, membranes were probed with the antibodies diluted with 5% BSA (NRF3) or 5% milk (β-actin and PCNA and secondary antibodies) in Tris-buffered saline with 0.1% Tween 20. Primary antibodies anti-NRF3 (HPA055889, Sigma-Aldrich), anti-β-actin (NB600-501, Novus Biologicals, UK), and anti-PCNA (NB600-501SS, Novus Biologicals, UK) were incubated overnight, and appropriate HRP-conjugated secondary antibodies (sc-2054 and sc-2055, Santa Cruz, CA, USA) were incubated at RT for one hour. Blots were detected with the Western blot imaging system Azure 600 (Azure Biosystems, CA, USA).
+ Open protocol
+ Expand
9

Tumor Protein Extraction and Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
On day 22, the tumors were excised and proteins were extracted using radioimmunoprecipitation assay buffer (Beyotime Institute of Biotechnology, Inc., Haimen, China) supplemented with protease inhibitor cocktail (100:1; Sigma-Aldrich). Tumor tissues were homogenized prior to western blot and PCR analysis in liquid nitrogen using a mortar and pestle. Total protein concentrations in the supernatant were determined via the Bicinchoninic Acid assay (P0013B; Beyotime Institute of Biotechnology, Inc.). A total of 30 µg protein was loaded per lane for western blot analysis. Protein samples were separated by 10% SDS-PAGE and transferred onto polyvinylidene difluoride membranes (EMD Millipore, Billerica, MA, USA). After blocking with 5% skimmed milk in TBS containing 0.1% Tween 20 (TBST) for 2 h at 37°C, the membranes were incubated with anti-FAP (1:500; 28244; Abcam) or anti-β-actin (1:1,000; sc-130657; Santa Cruz Biotechnology, Inc., Dallas, TX, USA) primary polyclonal antibodies at 4°C overnight. After washing four times with TBST for 10 min, the membranes were incubated with the goat anti-rabbit HRP-conjugated secondary antibody (1:5,000; sc-2054; Santa Cruz Biotechnology, Inc.) for 1 h at 37°C. After washing with TBST as described above, the bands were visualized using enhanced chemiluminescence reagents (WBKLS0100 EMD Millipore).
+ Open protocol
+ Expand
10

Western Blot Analysis of TRPV4, p38, and Phospho-p38

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultured cells were washed twice with PBS and lysed on ice using ice-cold RIPA buffer for 20 minutes. The proteins were then subjected to SDS-PAGE and transferred to a PVDF membrane. The PVDF membrane was blocked in a 5% ECL priming blocker for 1 hour and incubated overnight at 4℃ with primary antibody: rabbit anti-TRPV4 (1:800, Abcam, Cambridge, UK), rabbit anti-p38 polyclonal antibody (1:200, CST, Beverly, MA, USA), rabbit anti-Pp38 polyclonal antibody (1:1000, CST), and anti-β-actin (1:1000, Santa Cruz Biotechnology, Santa Cruz, CA, USA). After washing three times with TBST, the membrane was placed in 1:5000 diluted secondary antibody (sc-2054, Santa Cruz Biotechnology) and incubated for 1 hour at room temperature. The immunoreaction products were visualized using the chemiluminescence-emanating ChemiDocTM MP Imaging System (Bio-Rad, Hercules, CA, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!