The largest database of trusted experimental protocols

9 protocols using sc 10741

1

Western Blot Analysis of Immune and Inflammatory Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole cells from ex vivo experiments were prepared by 1× cell lysis buffer (9803, Cell Signaling Technologies) with protease inhibitors (04693159001, Roche Molecular Biochemicals, USA). Protein concentrations were determined by using a BCA protein assay. Proteins were separated by SDS–PAGE, transferred to polyvinylidene fluoride membranes, and incubated overnight at 4 °C with antibodies diluted with blocking liquid including anti-PAD4 (ab2148, Abcam, 1:800), anti-CD68 (NB100-683, Novus, 1:500), anti-α-SMA (ab7817, Abcam, 1:1000), anti-H3CIT (ab5103, Abcam, 1:500), anti-GAPDH (60004-1-Ig, Proteintech, 1:5000), anti-MYD88 (SC-74532, Santa Cruz, 1:600), anti-TLR4 (SC-10741, Santa Cruz, 1:500), anti-pSTAT3 (9145, Cell Signaling Technology, 1:1000), anti-Stat3 (9139, Cell Signaling Technology, 1:1000), anti-SOCS1 (ab9870, Abcam,1:800), and anti-STING (ab288157, Abcam, 1:1000). Then incubated with secondary antibody for 1 h and bends were visualized using chemiluminescence (TANON, China) and viewed under Amersham Imager 600 system (GE Healthcare, USA). Uncropped scans of the immunoblots are supplied in the Source Data file.
+ Open protocol
+ Expand
2

Immunofluorescence Staining of PMNs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Unpermeabilized human PMNs were subjected to immunofluorescence staining
following fixation in 2% paraformaldehyde in 2% glucose, 0.1 M sodium
phosphate buffer, pH 7.2 for 20 minutes at room temperature. Cells were blocked with
5% normal donkey serum in 1% BSA for 30 minutes at room temperature. The
affinity purified chicken anti-ECRG4 IgY antibody (Genway, 1:2000), and either rabbit
polyclonal anti-TLR4 (sc-10741, Santa Cruz ,1:250), goat polyclonal anti-CD14 (sc-6998,
Santa Cruz ,1:250), or rabbit polyclonal anti-MD2 (sc-20668, Santa Cruz ,1:250), diluted
in 1% BSA/PBS and incubated for one hour at room temperature. Following further
PBS wash, the appropriate Alexa-fluor-conjugated secondary antibodies (Molecular Probes,
Eugene, OR, 1:700) were incubated for 1 hour at room temperature, washed in PBS, mounted
in Slow fade for imaging and imaged with an Olympus Fluoview 1000 (ASW 1.7b) laser
scanning confocal microscope (Olympus, Melville, NY).
+ Open protocol
+ Expand
3

Immunofluorescence analysis of mouse kidney

Check if the same lab product or an alternative is used in the 5 most similar protocols
The kidney tissues were dissected from the mouse, fixed in OCT compound, and stored at −80°C until use. Several 6 μm thick frozen sections were prepared and fixed with ice-cold methanol, air-dried for 30 min at room temperature, and then blocked with blocking buffer containing 2% bovine serum albumin (BSA) and 0.05% Tween-20 in PBS. After washing with Tween in PBS (PBST; 0.1% Tween-20 in PBS), the slides were coincubated with VPAC1 antibody (1 : 50 dilution, Santa Cruz: sc-30019), podocalyxin (1 : 200 dilution, R&D systems: MAB1556), and toll-like receptor 4 (1 : 50 dilution, Santa Cruz: sc-10741). The slides were imaged by the Axio Observer D1 (ZEISS) or with a confocal laser scanning microscope (Leica LSM5 PASCAL). The images were processed using Adobe Photoshop.
+ Open protocol
+ Expand
4

Investigating Lycopene's Impact on HDM-Induced TLR4 Activation

Check if the same lab product or an alternative is used in the 5 most similar protocols
To investigate the effect of lycopene on the HDM-induced TLR4 activation, cells were pretreated with lycopene for 1 h, before treatment with HDM for 2 h on glass slides, and then fixed with cold 100% methanol. The fixed cells were blocked for 1 h in a blocking solution and then incubated at 20–22 °C for 1 h with a primary antibody against TLR4 (1:100; SC-10741, Santa Cruz Biotechnology, Dallas, TX, USA). After washing with PBS, the cells were allowed to react with a rhodamine-conjugated mouse anti-rabbit IgG antibody (1:200; SC-2492, Santa Cruz Biotechnology) for 1 h. After removal of the excess of secondary antibody, the cells were washed with PBS and covered with Vectashield antifade mounting medium containing 4,6-diamidino-2-phenylindole (DAPI). The preparations were incubated for 30 min to allow for saturation with DAPI. The cells were stained with rhodamine-conjugated antibody and subsequently examined under a laser scanning confocal microscope (Zeiss LSM700, Carl Zeiss Inc., Thornwood, NY, USA) and photographed.
+ Open protocol
+ Expand
5

Immunohistochemical Analysis of COX-2, GAPDH, and TLR4

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sections were dewaxed, dehydrated, rehydrated before immunostaining, and sealed with goat serum. Then, antibodies against COX-2 (#12282, CST), GAPDH (sc-25778, Santa Cruz Biotechnology), or TLR4 (sc-10741, Santa Cruz Bio) were added. Slices were dewaxed in xylene and dehydrated in ethanol. After endogenous peroxidase neutralization and the microwave extraction of antigens, slices were blocked in goat serum, then incubated overnight in primary antibodies against COX-2 (#12282, Cell Signaling Technology), GAPDH (sc-25778, Santa Cruz Biotechnology) or TLR4 (sc-10741, Santa Cruz Biotechnology). Sections were washed in PBS and incubated with a universal secondary antibody (PV-6000, Zsbio, Beijing, China) for 30 min, after which 3-3 diaminobenzidine (DAB) and hematoxylin were applied. After washing in PBS containing 0.05% Tween 20, sections were incubated with a general purpose second antibody (PV-6000, Zsbio, Beijing, China) for 30 min. Reaction products were observed using 3-3 diaminobenzidine (DAB) and stained with hematoxylin. Dyed area calculations were performed in Image-pro Plus 6.0 software and the integrated optical density (IOD) analysis of three regression fields was performed. Protein expression was expressed as average density, which was total IOD/area.
+ Open protocol
+ Expand
6

Protein Interactions in TLR Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
To identify interactions between the five TIR domain containing proteins and TLR2 or TLR4, co-immunoprecipitation using DynabeadsTM Protein G (Thermo Fisher) was performed. Abs against TLR2 (SC-10741, anti-rabbit, Santa Cruz Biotechnology), TLR4 (SC-10739, anti-rabbit, Santa Cruz Biotechnology), MyD88 (PA1-9072, anti-goat, Thermo Fisher), MAL (PA1-12815, anti-rabbit, Thermo Fisher), TRIF (PA5-20030, anti-rabbit, Thermo Fisher), TRAM (PA5-23115, anti-rabbit, Thermo Fisher), and SARM (PA5-20059, anti-rabbit, Thermo Fisher) were incubated with Dynabeads Protein G. The bead-bound Abs were then used for immunoprecipitation in the presence of cell lysates. Bound material was analyzed using a Western blot.
+ Open protocol
+ Expand
7

Western Blot Analysis of Inflammatory Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Generally, the lysed protein samples were subjected to SDS-PAGE and transferred onto nitrocellulose membranes via electrophoresis, while aliquots of samples were used to determine the protein concentration of each sample using a bicinchoninic acid (BCA) kit (KGPBCA, KeyGEN Biotech, Nanjing, China)7 (link),8 (link). Subsequently, membranes were incubated in blocking buffer for 2 h and incubated overnight at 4 °C with the following primary antibodies: anti-TLR4 (1:200; SC-10741; Santa Cruz, CA, USA), anti-p-IKKα + β (1:500; ab2064; Abcam, Cambridge, UK), anti-IKKα + β (1:1000; ab178870; Abcam, Cambridge, UK), anti-p-IκBα (1:1000; ab12135; Abcam, Cambridge, UK), anti-IκBα (1:500; ab32518; Abcam, Cambridge, UK), anti-p-NF-κB p65 (1:500; #3033; Cell Signaling Technology, Boston, USA), anti-NF-κB p65 (1:1000; ab16502; Abcam, Cambridge, UK), and anti-HO-1 (1:2000; ab13243; Abcam, Cambridge, UK). GAPDH (1:15,000; ab8245; Abcam, Cambridge, UK) was used as a control on the same membranes. Secondary antibodies were applied, and the bands were detected with West Dura Extended Duration Substrate (Pierce, USA) and X-ray film (Kodak, USA). Then relative density of bands (based on gray value) was analyzed using Bandscan 5.0 software (Glyko, USA) via comparison with GAPDH expression7 (link),8 (link).
+ Open protocol
+ Expand
8

Quantification and Detection of NF-κB and TLR4

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total proteins were extracted, and quantified using the bicinchoninic acid method. Then, equivalent weights of protein (40 μg/lane) were separated on 10% SDS-PAGE gels and transferred to a nitrocellulose membrane. The membranes were blocked with 5% non-fat milk in Tris-buffered saline and Tween 20 buffer and then incubated with the following primary antibodies: mouse monclonal NF-κB (p65; 1:500 dilution; sc-8008, Santa Cruz Biotechnology) and rabbit polyclonal TLR4 (1:500 dilution; sc-10741, Santa Cruz Biotechnology) at 4°C overnight. Subsequently, after being washed twice with PBS, the membranes were incubated with horseradish peroxidase (HRP)-conjugated goat anti-rabbit (ZDR-5306) and goat anti-mouse (ZDR-5307) secondary antibodies (1:2,000; ZSGB-BIO, Beijing, China). Specific bands were visualized using an enhanced chemiluminescence detection kit (Immobilon Western Chemiluminescence HRP Substrate; Merck Millipore, Darmstadt, Germany). Optical densities were detected using Quantity One software (Bio-Rad Laboratories, Hercules, CA, USA).
+ Open protocol
+ Expand
9

Western Blot Analysis of TLR4, NF-κB Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
Generally, the lysed protein samples were subjected to SDS-PAGE and transferred onto nitrocellulose membranes by electrophoresis, while aliquots of samples were used to determine the protein concentration of each sample using a bicinchoninic acid (BCA) kit (KGPBCA, KeyGEN Biotech, Nanjing, China). Subsequently, membranes were incubated in blocking buffer for 2 h and incubated overnight at 4 ºC with the following primary antibodies: anti-TLR4 (1:200, SC-10741, Santa Cruz, CA, USA), anti-p-IKKα+b (1:500, ab2064, Abcam, Cambrige, UK), anti-IKKα+b (1:1000, ab178870, Abcam, Cambrige, UK), anti-p-IκBα (1:1000, ab12135, Abcam, Cambrige, UK), anti-IκBα (1:500, ab32518, Abcam, Cambrige, UK), anti-p-NF-κB p65(1:500, #3033, Cell signaling Technology, Boston, USA), anti-NF-κB p65 (1:1000, ab16502, Abcam, Cambrige, UK), and anti-HO-1(1:2000, ab13243, Abcam, Cambrige, UK). GAPDH (1:1500, ab8245, Abcam, Cambrige, UK) was used as a control on the same membranes. Applied secondary antibodies, the bands were detected with West Dura Extended Duration Substrate (Pierce, USA) and x-ray lm (Kodak, USA) and then analyzed by Bandscan 5.0 software via comparison with GAPDH.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!