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13 protocols using lmax microplate luminometer

1

Quantitative ATP Measurement in Cells

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ATP concentrations were measured using an ATP determination kit (Molecular Probes, Inc., Eugene, OR, USA) following the manufacturer's instructions. Cells (2.5 × 105) were lysed in a buffer (containing 20 mM Tris, pH 7.0; 0.5% NP-40; 25 mM NaCl; 2.5 mM EDTA; and 2.5 mM EGTA). Immediately, the samples were placed in a white 96-well plate and the reaction solution was added. After 5 minutes, luminescence was measured in an LMax microplate luminometer (Molecular Devices Corp., Sunnyvale, CA, USA). The relative ATP levels were normalized with the protein concentration measured with the BCA Protein Assay kit (Thermo Fisher Scientific, Waltham, MA, USA).
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2

Knockdown and Overexpression of Signaling Proteins

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siRNA transfections were performed as previously described [55 (link)] with 100ηM of either a non-targeting siRNA control or siRNA smart pools targeting p53, IKKβ, IKKα or KRAS (Dharmacon/Thermo Scientific, Pittsburgh, PA). For p53 knockdown studies in murine cells, we used 50ηM of p53 siRNA or non-targeting control siRNA (Ambion/Life Technologies, Grand Island, NY). Plasmid DNA transfection using a pcDNA-p53 expression vector (Addgene, Cambridge, MA) were performed with Lipofectamine LTX (Life technologies, Grand Island, NY) according to the manufacturer´s instructions. Combined siRNA/plasmid transfections were performed sequentially, with the plasmid transfection performed 48h after the siRNA transfection. Dual Luciferase Reporter assays were performed as described [55 (link)]. For pharmacological studies, cells were treated with CmpdA or vehicle control as indicated (see figure legends). Relative light units were measured on an Lmax Microplate Luminometer (Molecular Devices, Sunnyvale, CA).
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3

Measuring Caspase-3/7 Activity

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Cells were plated in triplicate at 4 × 103 cells/per well in white-walled 96-well plates (Becton Dickinson). Cells were transfected with siRNA as described above and treated with the IKK inhibitor and/or docetaxel as indicated. Caspase-3/7 activity was measured at 48 hours post-transfection using the Caspase-Glo 3/7 assay (Promega) according to the manufacturer’s instructions. The Caspase-Glo 3/7 assay uses a caspase-3/7 tetrapeptide DEVD substrate that produces a luminescent signal on cleavage. Relative light units were measured on an Lmax Microplate Luminometer (Molecular Devices).
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4

Neutrophil Oxidant Production Assay

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Oxidant production was measured by chemiluminescence using 2×105 neutrophils during synchronized phagocytosis of particulate stimuli [20 (link), 21 (link), 38 (link), 39 (link)]. Extracellular ROS was measured using 20μM isoluminol with 20U/ml horseradish peroxidase (HRP), and intracellular ROS was measured using 20μM luminol with 20U/ml HRP and 10μg/ml superoxide dismutase (SOD) [20 (link), 21 (link), 32 (link)]. An Lmax microplate luminometer (Molecular Devices, Sunnyvale, CA, USA) was used to record luminescence as previously described [20 (link), 21 (link)].
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5

Superoxide Production Assay for Neutrophils

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This study was approved by Indiana University School of Medicine Institute Review Boards, and written informed consent was obtained from donors. Human neutrophils were isolated from heparin-anticoagulated venous blood using Polymorphprep (AXIS-SHIELD PoC, Oslo, Norwary). Superoxide production by neutrophils stimulated with live or heat-inactivated B. burgdorferi, with or without pyruvate, was measured by luminol chemiluminescence assay [55] (link). Specifically, 2.5×105 human neutrophils were plated into a well of a 96-well plate (COSTAR, Corning, NY) in PBSG (PBS plus 0.9 mM CaCl2, 0.5 mM MgCl2, 20 mM dextrose) in the presence of 50 µM luminol and horseradish peroxidase (HRP; final concentration: 20 U ml−1), without or with superoxide dismutase (SOD; final concentration: 75 µg ml−1) and kept on ice for 10 minutes prior to the assay. B. burgdorferi (2.5×106 cells) in 25 µl of PBS were added to wells, and the plate was spun down at 800 r.p.m. for 1 min immediately prior to reading. Relative light units (RLU) were monitored at 60-second intervals for up to one hour by the Long Kinetic module in an Lmax microplate luminometer (Molecular Devices, Sunnyvale, CA). Integrated RLU values were calculated by SOFTmax software (Molecular Devices).
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6

Quantifying NADPH Oxidase Activity

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NADPH oxidase activity in intact cells was measured using a modified assay [51] (link). Briefly, photon emission from the chromogenic substrate lucigenin was measured every 15 s for 20 min in an Lmax Microplate Luminometer (Molecular Devices). Lucigenin serves as the acceptor of electron/O2 generated by the NADPH oxidase complex. Activity measurement was performed in a 250-mM HEPES buffer, pH 7.4, containing NaCl 120 mM, KCl 5.9 mM, MgSO4 1.2 mM, CaCl2 1.75 mM, EDTA 0.5 mM, glucose 11 mM, lucigenin 0.2 mM, and NADPH 0.1 mM as the substrate. Non-treated or doxorubicin-treated cells were collected, counted, and pelleted at 400×g at 4°C for 4 min; the pellet was re-suspended in a balanced salt solution containing NaCl 130 mM, KCl 5 mM, MgCl2 1 mM, CaCl2 1.5 mM, phosphoric acid 35 mM, and HEPES 20 mM, pH 7.4. 0.5×106 cells in balanced salt solution containing 10 mM glucose and 1 mg/mL bovine serum albumin were used in measurement. A buffer blank was subtracted from each reading before data calculation. No activity could be measured in the absence of NADPH or in the presence of 100 µM DPI.
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7

Cell Viability Assay with TOX siRNA

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Cells were cultured overnight in a 96-well microplate and the next day divided into four groups: untreated, TOX siRNA construct #1, TOX siRNA construct #2, and negative control siRNA. Each treatment was added 24 hours following culture initiation. At 24 hours post-treatment, a CellTiter-Glo® Luminescent Cell Viability Assay (Promega, Madison, WI) was conducted according to manufacturer’s instructions. Plates were read using the Lmax Microplate Luminometer (Molecular Devices, Sunnyvale, CA) and SoftMax Pro Microplate Data Acquisition & Analysis Software (Molecular Devices). Each experiment was performed in quintuplicate, and statistical analysis comparing viability between treatment groups was conducted using the student’s t-test.
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8

Romidepsin and NM Cytotoxicity Assay

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Cells were cultured overnight in a 96-well microplate divided into four groups: untreated, 1μM romidepsin, 0.0001% NM, and combination 1μM romidepsin/0.0001% NM. Each treatment was added 24 hours following culture initiation. At a predetermined endpoint (3, 6, 12, 24, or 48 hours), a CellTiter-Glo® Luminescent Cell Viability Assay (Promega, Madison, WI) was conducted according to manufacturer's instructions. Plates were read using the Lmax Microplate Luminometer (Molecular Devices, Sunnyvale, CA) and SoftMax Pro Microplate Data Acquisition & Analysis Software (Molecular Devices). Each experiment was performed in quintuplicate and repeated a minimum of three times.
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9

Quantitative ATP Measurement Protocol

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ATP measurements were taken as previously described (48 (link)). After 1 h of treatment, cultures were pelleted, frozen on dry ice, and stored at −80°C until processed. Frozen cell pellets were suspended in 100 µl 0.025 M HEPES buffer with 0.02% Tween 80 (pH 7.75) and added to glass tubes (12 by 75 mm) containing 40 µl chloroform. Mixtures were then heated at 80°C for 20 min, and subsequently, 4.9 ml 0.025 M HEPES buffer (pH 7.75) was added. The ATP assay was performed as per the manufacturer’s protocol (Promega Enliten ATP assay system). Ten-microliter samples were added to a 96-well plate (Costar solid white) and loaded into an L-Max microplate luminometer (Molecular Devices). Enliten luciferase-luciferin reagent dissolved in sample buffer was injected immediately before the results were read. Luminescence was determined every 0.1 s for a total of 100 s. Data are the averages from 6 independent experiments assayed in duplicate.
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10

Caspase-3/7 Activity Assay

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Cells were plated in triplicate at 2 × 103 per well in white-walled 96-well plates (Becton Dickinson) for 24 hours and then were treated with the IKK inhibitor and/or cisplatin for additional 48 hours. Caspase-3/7 activity was measured using the Caspase-Glo 3/7 assay (Promega) according to the manufacturer's instructions. Caspase-Glo 3/7 assay uses a caspase-3/7 tetrapeptide DEVD substrate that produces a luminescent signal on cleavage. Relative light units were measured on an Lmax Microplate Luminometer (Molecular Devices).
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