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3 protocols using anti ha antibody ab9110

1

Generation and Use of Polyclonal Antibodies

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A custom p-FOXO3 rabbit polyclonal antibody was generated as described previously.12 (link) Anti-HA antibody (ab9110) was purchased from Abcam (Cambridge, MA, USA). Anti-FOXO3 (75D8), anti-acetylated-lysine (9441), anti-Bcl-2 (50D3), anti-TRAIL (C92B9), anti-SIRT1 (D1D7), anti-SIRT7 (D3K5A), anti-SAPK/JNK, p-SAPK/JNK (T183/Y185) and anti-poly (ADP-ribose) polymerase (9542) were purchased from Cell Signaling Technology (Boston, MA, USA). Anti-SIRT6 was purchased from Abnova (Walnut, CA, USA). Anti-GAPDH (FL-335) and anti-TRAIL (H-257) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Anti-actin (AC-15), anti-SIRT2 and anti-Flag (M2) were purchased from Sigma-Aldrich (St Louis, MO, USA). RSV, TSA, C646 and sirtinol were purchased from Sigma-Aldrich. NAD+ and CAY10591 were purchased from Cayman Chemical (Ann Arbor, MI, USA). rSIRT7 was purchased from SignalChem (Richmond, BC, Canada). SP600125 was purchased from Cell Signaling Technology. SB203580 was purchased from AdipoGen (San Diego, CA, USA). FR180204 was purchased from Calbiochem (Billerica, MA, USA). LPS from Escherichia coli O55:B5 was purchased from Enzo Life Science (Farmingdale, NY, USA).
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2

ChIP-qPCR Analysis of Transcription Factors

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ChIP was performed using a ChIP assay kit (Millipore) and Dynabeads Protein G (Invitrogen) as described previously (Hiramatsu et al., 2010 (link)). The following antibodies were used for ChIP: anti-c-Maf antibody (M153; Santa Cruz Biotechnology, Inc.), anti-HA antibody (ab9110; Abcam), anti-p300 antibody (C20; Santa Cruz Biotechnology, Inc.), and anti-H3K4me3 antibody (17–614; Millipore). Sequences of qPCR primers for ChIP-qPCR analysis are listed in Table S2. DNA contents were measured by qPCR with a SYBR green reagent. Data were expressed as the percent input for each ChIP fraction.
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3

Visualization of Transgene Expression in Mice

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Transgene expression was confirmed by visual inspection of tissue from paraformaldehyde-perfused mice. Following the completion of Ca2+ imaging sessions, mice were anesthetized by intraperitoneal injection of ketamine/xylazine (100 mg/kg and 10 mg/kg, respectively) and the chest cavity opened, exposing the heart. The heart was accessed by a needle and the animal was perfused at 2 ml/min with a 0.1 M phosphate-buffered (PB) solution followed by paraformaldehyde (4% by volume in PB) until the perfusate exiting an opening from the pulmonary artery ran clear. The cerebellum was removed by dissection and sliced into 80 µm sections in cold PB. When necessary, HA immunostaining was used to confirm hM4d expression. Samples were first incubated with anti-HA antibody (#ab9110, Abcam, Cambridge, UK), followed by an Alexa 633 secondary antibody (Thermo Fisher Scientific, Waltham, MA). DAPI (D1306, Thermo Fisher Scientific) counterstaining was used to identify cell locations in some cases. Images were collected on a confocal microscope (LSM 780 Axio Imager 2; Zeiss, Oberkochen, Germany) using 488 nm excitation and 493–598 nm emission for GCaMP6f, 633 nm excitation and 638–747 nm emission for Alexa 633, 405 nm excitation and 410–507 nm emission for DAPI, and 514 nm excitation and 519–620 nm emission for YFP.
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