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21 protocols using apc anti mouse cd3

1

Characterization of Tumor-Infiltrating Immune Cells

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Seven days after challenging mice with 4T1 tumor, the inguinal lymph nodes and spleen were isolated and dissociated into single cells by mashing through cell strainers (70 μm). The cell suspension of inguinal lymph nodes was stained with APC anti-mouse CD3 (BioLegend), PE anti-mouse CD8a (BioLegend), PE/Cy7 anti-mouse CD62L (BioLegend), FITC anti-mouse/ human CD44 (BioLegend) and APC anti-mouse CD11c, FITC anti-mouse CD80, PE anti-mouse CD86 and APC anti-mouse CD3, PE anti-mouse CD8a, respectively. The cell suspension of spleen was stained with APC anti-mouse CD3 (BioLegend), PE anti-mouse CD8a (BioLegend). The percentage of CD3+CD8+CD44highCD62low cells, CD11c+CD80+CD86+ cells, and CD3+CD8+ corresponding to effector memory T cells, DC cells, CD8+ T cells was analyzed, respectively.
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2

Tumor-Induced Immune Responses in Mice

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After challenging mice with 4T1 tumours for seven days, the inguinal lymph nodes and spleens were isolated and dissociated into single cells by mashing through cell strainers (70 μm). The inguinal lymph node and spleen cell suspensions were stained with APC anti-mouse CD3 (Biolegend), PE anti-mouse CD8a (Biolegend), PE/Cy7 anti-mouse CD62L (Biolegend), FITC anti-mouse/human CD44 (Biolegend), APC anti-mouse CD11c, FITC anti-mouse CD80, PE anti-mouse CD86 and APC anti-mouse CD3, and PE anti-mouse CD8a. The percentages of CD3+CD8+CD44+CD62− cells, CD11c+CD80+CD86+ cells, and CD3+CD8+ cells corresponding to effector memory T cells, DCs, and CD8+ T cells, were analysed by flow cytometry.
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3

Antibody Staining for Flow Cytometry

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Anti-TRIM33 antibody (A301-060A; Bethyl Laboratories, Montgomery, TX), Anti-PU.1 antibody (#2266; Cell Signaling, Beverly, MA or sc-352; Santa Cruz, Dallas, TX), Anti-Bim antibody (#2819; Cell Signaling), Anti-H3K27ac antibody (ab4729; Abcam, Cambridge, MA), Anti-H3K4me3 antibody (07-473; Millipore), Anti-ß-actin HRP antibody (#A3854; Sigma, Ronkonkoma, NY), APC anti-mouse B220 (#103212; BioLegend, San Diego, CA), APC anti-mouse CD-19, APC anti-mouse Mac-1/Cd11b (#101211; BioLegend), APC anti-mouse Ly-6G/Gr-1 (#17-5931; eBioscience, San Diego, CA), APC anti-mouse TER-119 (#116212; BioLegend), APC anti-mouse CD-3 (#100209; BioLegend).
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4

Comprehensive Murine Immune Phenotyping

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Cell suspensions were counted and incubated in 1% BSA/DPBS for 30 min at 4 °C to block non-specific binding. The cells were incubated with FITC anti-mouse CD45 (157,214, Biolegend), APC-anti-mouse CD3 (100,236, Biolegend), PE/CY5.5 anti-mouse CD4 (100,434, Biolegend), and PE anti-mouse CD8a (100,708, Biolegend) and subsequently permeabilized with a suitable buffer (Biyuntian, China) ; moreover, they were incubated overnight with PE anti-mouse Foxp3 (126,404, Biolegend) and BV421 anti-mouse T-bet (644,815, Biolegend) antibodies at 4 °C for intracellular staining. To analyze cytokine secretion, the cells were stimulated with Monensin (420,701, Biolegend) and a cell activation cocktail (423,301, Biolegend), followed by surface staining, fixation, and permeabilization as described. The cells were the incubated overnight with PE anti-mouse INF-γ (505,808, Biolegend), BV421 anti-mouse IL-4 (504,119, Biolegend), and PE/CY7 anti-mouse IL-17 A (506,922, Biolegend) antibodies at 4 °C. The data was analyzed using Flowjo software (Tree Star Inc., San Carlos, CA).
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5

Single-cell analysis of tumor immune cells

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The single cell suspensions were obtained followed protocol described previously. In brief, the primary tumors were dissociated in PBS with 1 mg/ml collagenase D and 4 μg/ml DNase I for 1 hour in 37 °C with periodic vortexing, and centrifuged at 500 g for 5–10 minutes, followed by removing red blood cells (RBC) by RBC lysis buffer. The cells were first blocked by anti-CD16/32 (101302, BioLegend) for 10 minutes to reduce nonspecific binding and then stained with following antibodies individually: PerCP/Cyanine5.5 anti-mouse CD45 (103131; BioLegend), PE anti-mouse NK-1.1 (108707; BioLegend), APC anti-mouse CD3 (100236; BioLegend), FITC anti-mouse CD69 (104505; BioLegend), FITC anti-human/mouse Granzyme B (515403; BioLegend), and FITC anti-mouse IFN-γ (505805; BioLegend). Zombie Violet™ Fixable Viability Kit (423113; BioLegend) was used to determine cell viability.
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6

Comprehensive PD-L1 Detection Protocol

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Antibodies used included rabbit anti-human PD-L1 (#13684, Cell Signaling Technology, Beverly, MA, USA; 1:1000 for Western blot), anti-Cleaved Caspase-3 (#9664, Cell Signaling Technology; 1:250 for IHC), Rabbit anti-human AhR (#83200, Cell Signaling Technology; 1:50 for ChIP), goat anti-mouse PD-L1 (#AF1019, R&D, Minneapolis, MN, USA; 10 µg/mL for IHC), anti-Ki67 (#ab15580, Abcam, Cambridge, MA, USA; 1:500 for IHC), TTF1 (#ab76013, Abcam, Cambridge, MA, USA; 1:200 for IHC), anti-β-Actin (#A1978, Sigma, St. Louis, MO, USA; 1:5000 for WB), APC anti-mouse CD3 (#100235, Biolegend, San Diego, CA, USA; 1:20 for flow cytometry), PE/Cy7 anti-mouse CD8a (#100721, Biolegend; 1:20 for flow cytometry), APC/Cy7 anti-mouse CD4 (#100413, Biolegend; 1:20 for flow cytometry), PE anti-mouse CD45 (#103105, Biolegend; 1:20 for flow cytometry), PE/Cy7 anti-mouse PD-L1 (#124313, Biolegend; 1:20 for flow cytometry), PE anti-mouse PD-1 (#135206, Biolegend; 1:20 for flow cytometry), FITC anti-mouse B220 (#103205, Biolegend, San Diego, CA, USA; 1:20 for flow cytometry), In Vivo Plus anti-mouse PD-L1 (#BP0101), In Vivo Plus Rat IgG 2b Isotype Control (Clone: LTF-2, #BP0090) were purchased from BioXcell (West Lebanon, NH, USA). Benzo(a)pyrene (#B1760) and Alpha-Naphthoflavone (ANF; # N5757) were purchased from Sigma.
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7

Quantifying T Cell Proliferation in Murine Splenocytes

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Splenocytes from infected C57BL/6 (3 months post-infection) mice were plated into 24-well plates at a cell density of 105 cells/mL in RPMI medium supplemented with 10% FBS containing 2 μg/mL of Con A in the absence or presence of mDC or tDCs (1:10 ratio) for 72 h. Quantitative evaluation of the exponential cell expansion was estimated by the carboxyfluorescein succinimidyl ester–CFSE assay (Invitrogen/Molecular Probes). CFSE staining was performed according to methodology previously described (27 (link)). Before acquisition, cells were centrifuged and the pellet was washed twice with cold PBS and labeled with APC anti-mouse CD3 (Biolegend, San Diego, CA) diluted 1:100 for 15 min. Acquisition was performed using a BD LSRFortessa SORP cytometer and data were analyzed using FlowJo software (Tree Star, Ashland, OR). A total of 100,000 events were acquired.
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8

Isolation and Characterization of Murine Splenic T Cells

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The splenic lymphocytes of mice were isolated using a splenic lymphocytes isolation kit (TBD science, China). Briefly, the splenocytes were isolated from fresh spleen by gentle crushing in DMEM (HyClone, USA). After filtering through the 70 μM screen, the suspension was transferred slowly onto an isolation reagent. After horizontal centrifugation for 30 min, the lymphocytes were collected from the interlayer. Subsequently, the lymphocytes were washed and resuspended in the sterile PBS, and 1 × 106 lymphocytes were stained with APC anti-mouse CD3, FITC anti-mouse CD4, and PE anti-mouse CD8 antibodies (BioLegend, USA) in the dark for 40 min. After washing, the proportion of CD3 + CD4+ or CD3 + CD8+ T cells from the stained lymphocytes were analyzed using the FCM.
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9

Murine Colitis Induction and Analysis

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Recombinant human TNFα was purchased from Sigma (St. Louis, MO, USA, 0609AFC25). The antibodies used were mouse anti-human Pacer (Novus, B01P, NBH00080183-B01P), anti-rabbit GAPDH (Cell Signaling Technology, Danvers, MA, USA, 2118s), anti-mouse PTGS2 (Cox2) (Beckton Dickinson, Franklin Lakes, NJ, USA, 610203) and custom anti-mouse Pacer manufactured by Abmart raised against a 14 aa peptide of the N-terminal domain of mouse Pacer [33 (link)]. Concanavalin A (ConA) (Sigma, SLBR2953) was purchased from Sigma (St. Louis, MO, USA, SLBR2953). SYTOX™ Green dyekit was purchased from Life Technologies (Darmstadt, Germany, S7020), and the antibody used for flow cytometry was APC anti-mouse CD3 (BioLegend, San Diego, CA, USA, 100236). Colitis-grade dextran sulfate sodium (DSS) (MP Biomedicals, Santa Ana, CA, USA, 160110) and C57BL/6 mice were acquired from the Jackson Laboratory and maintained under standard conditions in the animal facility of Universidad Mayor Faculty of Science. All animal procedures were approved by the Animal Welfare and Ethics Committee of Universidad Mayor (Protocol Number, 06/2016-13-2017(E1)).
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10

Tumor Tissue Digestion and Flow Cytometry

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After 4 days of SINV injection into the U-87MG subcutaneous tumor model, tumor tissue was taken in a 100 mm petri dish, and each sample was treated separately as follows: rinsed with 1× HBSS and then transferred to a 15 milliliter (mL) centrifuge tube after the tissue had been cut up with scissors. A total of 5 mL of 10× triple enzyme mix (1 g Collagenase IV, 100 mg Hyaluronidase, and 20,000 units DNase in 100 mL HBSS solution, filtered through a 0.22 micrometer filter, dispensed, and stored at −20 °C; all enzymes used were obtained from Yeasen) was added to the centrifuge tube and digested overnight at room temperature. The digestion was then suspended by adding RPMI 1640 medium containing serum (Thermo Fisher) and centrifuged at 300× g for 5 min. The precipitate was resuspended in 100 µL PBS to make a cell suspension, to which 2 µL of primary antibody was added and incubated on ice in the dark for 20 min. Cells were resuspended by adding 200 µL PBS, and 1 µL Zombie Aqua™ Fixable Viability Kit (Cat# 423101, Biolegend, San Diego, CA, USA) was added to exclude dead cells, incubated on ice for 3–5 min, and then analyzed by flow cytometry. The antibodies used in the analysis were as follows: APC anti-mouse CD3 (Cat#100236, Biolegend); PE anti-mouse CD49b (Cat#103506, Biolegend). The results obtained were analyzed using Flowjo, version 10.8.1 software.
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