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9 protocols using mir 101 3p mimic

1

Silencing SNHG1 in NSCLC

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The small interfering RNAs (siRNAs) specifically targeting SNHG1 were purchased from Invitrogen. The miR-101-3p mimics and miR-101-3p inhibitors were purchased from Guangzhou RiboBio Co. Ltd. The siRNA sequences for SNHG1 were si-SNHG1, 5′-CAGCAGTTGAGGGTTTGCTGTGTAT-3′ [19 (link)]. NSCLC cells were transfected with siRNA oligonucleotides, miR-101-3p mimics or miR-101-3p inhibitors using Lipofectamine 2000 (Invitrogen), according to the manufacturer's protocol.
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2

Regulatory Mechanisms of MALAT1 in Colon Cancer

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CC cell lines HCT116 (ATCC® CCL-247) and HT29 (ATCC® HTB-38) were purchased from American Type Culture Collection (ATCC; Manassas, VA, USA), and human normal colon epithelial cell line NCM 460 (CM-H203) was purchased from GAINING BIOLOGICAL (Shanghai, China). All cells were cultured in Roswell Park Memorial Institute 1640 Medium (RPMI1640; Gibco, Grand Island, NY, USA) containing 10% fetal bovine serum (Gibco, Grand Island, NY, USA) at 37°C with 5% CO2.
The overexpression plasmid of MALAT1 (LV-MALAT1), the small interfering RNA (si-RNA) against MALAT1 (si-MALAT1-1 and si-MALAT1-2), si-RNA against STC1 (si-STC1), and the negative controls (LV-NC and si-NC) were purchased from GenePharma (Shanghai, China). The targeting sequences for si-MALAT1-1, si-MALAT1-2, si-STC1 and si-NC were 5ʹ-GGCAAUGUUUUACACUAUUTT-3ʹ, 5ʹ-CACAGGGAAAGCGAGTGGTTGGTAA-3ʹ, 5ʹ-CTGCTTAAACAAAGCAGTATA-3ʹ and 5ʹ-UUCUCCGAACGUGUCACGUTT-3ʹ, respectively. In addition, miR-101-3p mimics, miR-101-3p inhibitor and the negative controls (mimics NC and inhibitor NC) were purchased from Ribobio (Guangzhou, China). When reaching 80% confluence, cells were transfected with the above agents using Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA) for 48 h.
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3

Overexpression of BIRC5 and miR-101-3p Modulation

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The plasmids pcDNA3.1-BIRC5 and pcDNA3.1-Vector and the miR-101-3p mimics and negative control (NC) mimics were purchased from Guangzhou RiboBio Co., Ltd. Calu3 and H292 cells were seeded in 6-well plates (8×105 cells/well) and transfected with 1.6 µg of pcDNA3.1-BIRC5/vector plasmids or 50 nM mimics/NC mimics using Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.). The media in each well was then replaced with fresh medium 6 h following incubation with the transfection mixture at 37°C. After 48 h, the cells were subjected to subsequent analyses.
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4

Regulation of miR-101-3p in Gene Silencing

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MiR-101-3p mimics, inhibitors or negative controls were designed from RiboBio Co., Ltd Company (Guangzhou, China). AGT4D siRNA and Negative control was purchased from Santa Cruz. According to the instruction, lipofectamine 2000 (Invitrogen, USA) was used for transfection. The relative sequence is shown in Table 1.

The primer sequences are as follows

NameSequence
NC siRNA5′- ATCCCCGAACGUGACACGUAT −3′
AGT4D siRNANC mimicsNC inhibitor5′- CGGACCAGCUUUAGCAAGA −3′5ʹ- CAGUACUUUUGUGUAGUACAA −3ʹ5ʹ- UUCUCCGAACGUGUCACGUTT −3ʹ
miR-101-3p mimics5′- UACAGUACUGUGAUAACUGA −3′
miR-101-3p inhibitor5′- UCAGUUAUCACAGUACUGUA −3′
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5

Doxorubicin Liposome-miRNA Nanoparticle Synthesis and Characterization

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The schematic diagram of design and method of this study was presented in Figure S1. Doxorubicin liposomes (DOX‐L) were synthesized by methods described in literatures previously 22. MiR‐101‐3p mimics and the negative control miR‐NC were synthesised by Guangzhou Ribobio Company (Guangzhou, China). To prepare miR‐101/DOX‐L, DOX‐L and miR‐101‐3p were mixed at w/w (weight DOX‐L/weight microRNA) ratio of more than 200:1 in RNase‐free H2O by adding a stock solution of DOX‐L into a miR‐101‐3p solution. The samples were vortexed for 2–3 min and then incubated at room temperature for 30 min to ensure formation of miR‐101/DOX‐L nanoparticles (Fig. S2). L, DOX‐L, and miR‐101/DOX‐L were characterized by UV‐Vis spectrophotometry and dynamic light scattering (DLS). Cellular uptake assay, TaqMan qRT‐PCR, SYBR Green qRT‐PCR, wound‐healing assay, cell proliferation, migration/invasion, apoptosis, clonogenicity assay, and western blot analysis were performed as described previously 7, and detailed in Data S1. The primer sequences used in SYBR Green qRT‐PCR are listed in Table S2.
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6

Silencing NEAT1 in NSCLC Cells

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The siRNA of NEAT1 (si-NEAT1) and negative control siRNA (si-NC) were obtained from Ribo-bio (Guangzhou, China). Cells were seeded in 96-well Plates for 24 h before the experiment. These recombinant plasmids were transiently transfected into NSCLC cells using TransMessenger Transfection Reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions.
miR-101-3p mimics, miR-101-3p inhibitors and si-SOX9, as well as those corresponding negative controls were purchased from Guangzhou RiboBio Co. Ltd. These recombinant plasmids were transfected into NSCLC cells using Lipofectamine 2000 (Invitrogen), according to the manufacturer's protocol.
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7

Transfection of miR-101-3p and EIF4G2 in NPCs

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The miR-101-3p inhibitor, miR-101-3p mimic, and their corresponding negative control (NC) were purchased from RiboBio (Guangzhou, China); EIF4G2-siRNA and its corresponding NC were purchased from Genechem Co., Ltd. (Shanghai, China). NPCs in the logarithmic phase were seeded into the 6-well plates (2 × 105 cells/well) and cultured for 24 h. Then, cell transfection was performed using Lipofectamine 2000 (siRNA 10–100 nM and miRNA mimic 50 nM). The subsequent experiments were conducted after 48 h.
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8

Plasmid Transfection and Cell Selection

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The NEAT1 knockdown (sh-NEAT1) plasmid, NEAT1 over-expression (OE-NEAT1) plasmid and the corresponding negative control (sh-NC), as well as the miR-101-3p mimic, miR-101-3p inhibitor and the corresponding negative control were synthesized (Ribobio, Guangzhou, China). The EMP2 full-length (with 3’-UTR) plasmid, EMP2 mutated plasmid (with 3’-UTR), and the negative controls were synthesized (Life technology, Carlsbad, CA, USA). The lipofectamine 2000 reagent (Life Technologies Corporation, Carlsbad, CA, USA) was used for the cells transfection according to the manufacturer’s instructions. The plasmid carrying a non-targeting sequence was used as a negative control (NC) of NEAT1 which were referred as to sh-NC. The stably transfected cells were selected by the culture medium containing 0.5 mg/ml G418 (Sigma-Aldrich, St Louis, MO, USA). After approximately 4 weeks, G418-resistant cell clones were established. miR-101-3p mimics, inhibitors and their respective NC were synthesized (Life Technologies Corporation, MD, USA) and transfected into cells in the in vitro study. Because the highest transfection efficiency was occurred at 48 h, thus 72 h post-transfection was considered as the harvest time in the subsequent experiments.
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9

Investigating PLK2, SKP1, and α-Syn

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Short hairpin RNAs (shRNAs) for PLK2 and SKP1, overexpression plasmids for PLK2 and α-Syn (pcDNA3.1-α-Syn), and corresponding negative controls were purchased from Shanghai GenePharma Co., Ltd. (Shanghai, China). miR-101-3p mimic, inhibitor, and negative control were purchased from RiboBio (Guangzhou, China). Transfection was conducted according to the instruction of the manufacturer.
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