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44 protocols using crenolanib

1

Isolation of Primary Mouse Mammary Fibroblasts

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Primary mouse mammary fibroblasts (MMFs) were purified as described [7] (link), [27] (link). Briefly, mammary tissue was minced and digested with an enzymatic solution [0.15% Collagenase, C0130 (Sigma, Saint Loius, MO, USA), 160 U/ml hyaluronidase (H#4001, Sigma), insulin (#I5500, Sigma), 1 μg/ml hydrocortisone (#H4001, Sigma) and 1% penicillin/streptomycin (ThermoFischer Scientific, Waltham, MA, USA)] in 5% CO2 overnight at 37 °C. Tissue was neutralized with 10%FBS-DMEM (ThermoFisher), centrifuged and resuspended in 10%FBS-DMEM. Gravity separation was then utilized to separate out heavier epithelial organoids from the fibroblast fraction. After 24 hours, culture media was replaced with fresh 10%FBS-DMEM. For crenolanib experiments, crenolanib (Selleckchem, Houston, TX, USA) was added to culture media at a concentration of 1 μM for 24 hours.
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2

Investigating YAP Signaling Modulation

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Crenolanib (Selleck Chemicals) and Dasatinib (TSZ Chemicals) was added to cells at final concentrations from 0.1–10μM. The following primary antisera were used for immunoblot analysis: PDGF Receptor (28E1 Cell Signaling, Danvers, MA), actin (C-11 Santa Cruz, Dallas, TX), phospho YAPY357 (ab62751 abcam, Cambridge, MA), phospho YAPS127 (4911 Cell Signaling), total YAP (63.7 Santa Cruz), lamin B1 (D8P3U Cell Signaling), GAPDH (MAB374 Millipore, Temecula, CA), phospho SrcY416 (2101 Cell Signaling), Src (L4A1 Cell Signaling), and Mcl-1 (S-19 Santa Cruz). The following primary monoclonal antibodies were used for immunofluorescence: total YAP (63.7 Santa Cruz) and anti-FLAG M2 (F1804 Sigma Adrich). For ChIP immunoprecipitation assays we employed an anti-YAP monoclonal antibody (63.7 Santa Cruz). ProLong Antifade with 4′,6-diamidino-2-phenylindole (DAPI, Life Technologies) was used for nuclear staining. The following primers used are listed in Table 1.
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3

Glioblastoma Stem Cell Culturing and Treatments

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We have used the same clinical materials reported in our previous papers
[24 (link), 25 (link)]. In brief, the CSC cells were retrieved from adult patients affected by GBM and undergoing craniotomy at the Institute of Neurosurgery, Catholic University-School of Medicine of Rome, Italy. Dissociated cells were cultured in the presence of human recombinant EGF (20 ng/ml; PeproTech, Rocky Hill, NJ), human recombinant bFGF (10 ng/ml; PeproTech), in DMEM/F12 (1:1) serum-free medium (Invitrogen, Carlsband, CA) containing L glutamine 2 mM, glucose 0.6%, putrescine 9.6 ug/ml, progesterone 0.025 mg/ml, sodium selenite 5.2 ng/ml, insulin 0.025 mg/ml, apo-transferrin sodium salt 0.1 mg/ml, sodium bicarbonate 3 mM, Hepes 5 mM, BSA 4 mg/ml, heparin 4 ug/ml (all purchased by Sigma-Aldrich). Floating neurospheres were dissociated with Accutase at 37°C (Merck-Millipore). In some cases, neurospheres were passaged up to passage P60 and the experiments were performed between P14 and P60. Cell starvation was planned for 2 days in Stem Medium w/o EGF and bFGF. Subsequently, PDGF-AA was added (40 ng/ml, Peprotech) for different time points (5′, 10′, 30′, 120′ and 24 hours). Cells treatments were performed with GSI-X (also named L-685,458, Calbiochem), AG1478 (Calbiochem) and Crenolanib (CP-8685596, Selleckchem).
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4

TNBC Cell Line Cultivation Protocol

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Human normal breast epithelial cell (MCF-10A) and human TNBC cell lines (MDA-MB-231, MDA-MB-468, MDA-MB-436, HCC-1937) were available from the ATCC Cell Bank (Manassas, VA). Cell samples were cultivated in DMEM (Invitrogen, Carlsbad, CA), adding FBS (10%) and penicillin–streptomycin mixture (1%) under 37 °C and 5% CO2. Besides, cycloheximide (CHX; 5 µM) and MG132 (10 μM) were both purchased from Sigma-Aldrich (St. Louis, MO). Crenolanib (1 μm) was bought from Selleckchem (Houston, TX).
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5

Cell Proliferation Kinetics Monitoring

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Cell proliferation kinetics were monitored and recorded with the IncuCyte System (Essen BioScience, Ann Arbor, MI). Imatinib, pazopanib, and crenolanib were all obtained from Selleck (Houston, TX). For all in vitro experimentations, all three compounds were dosed at 1 μM. R1507 was dosed at 100 nM.
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6

Crenolanib Modulates PDGF Signaling

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Crenolanib (CP-868596) was purchased from Selleck Chemicals LLC (USA). Recombinant human PDGF-BB protein was purchased from R&D system (USA). α-SMA, desmin, vimentin, and collagen-I, signal transducer and activator of transcription 3 (STAT3), phosphor-STAT3 (p-STAT3), signal transducer and activator of transcription 5 (STAT5), phosphor-STAT5 (p-STAT5), serine-threonine protein kinase (AKT), phosphor-AKT (p-AKT), extracellular regulated kinase (ERK), phosphor-ERK (p-ERK), PDGFRα, phosphor-PDGFRα (p-PDGFRα), PDGFRβ, phosphor-PDGFRβ (p-PDGFRβ), and β-actin were purchased from Abcam technology (USA).
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7

Tyrosine Kinase Inhibitor Preparation

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PLX4720, AZD8055, GDC0941, BEZ235, Canertinib, Erlotinib (Tarceva), Gefitinib (Iressa), Crenolanib, Lapatinib (Tykerb) and Dasatinib (Sprycel) (all from Selleck Chemicals, Houston, TX, USA) were diluted in DMSO at 10 mM/ml and stored at −20°C until use; when added to cell cultures, the final DMSO concentration was 0.25–0.5%.
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8

Chemical Agents for Cell Studies

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The following chemicals were used in this study: crenolanib (Selleck, CP-868596), nocodazole (Wako, 31430-18-9), MG132 (Wako, 133407-82-6), BI2536 (AdooQ, A10134), and SiR-DNA (Spirochrome, CY-SC007).
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9

Small Molecule Inhibitor Evaluation

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FF-10101 and FLA-9430 were provided by FUJIFILM. Gilteritinib (#S7754), quizartinib (#S1526), crenolanib (#S2730), and midostaurin (#S8064) were purchased from Selleckchem.
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10

Inhibition of Pim Kinases and FLT3-ITD in AML

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AZD1208, an orally bioavailable highly selective inhibitor with single nanomolar potency against all three Pim kinases, Pim-1, Pim-2 and Pim-3 (14 (link)), provided by AstraZeneca, was used at 1 μM based on inhibition of BAD phosphorylation at serine 112 as a pharmacodynamic endpoint (16 (link)) and on phase I clinical trial data (11 ). The FLT3 inhibitors quizartinib and crenolanib (Selleck Chemicals, Houston, TX), sorafenib (LC Laboratories, Woburn, MA) and gilteritinib (Active Biochem, Maplewood, NJ), all clinically active in FLT3-ITD AML, were used at pharmacologically relevant concentrations (17 (link)–20 (link)). The proteasome inhibitor MG132 and the USP9X inhibitor WP1130 were purchased from EMD Millipore, Billerica, MA.
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