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Itaq universal sybr green supermix

Manufactured by Thermo Fisher Scientific
Sourced in United States

The iTaq Universal SYBR Green Supermix is a pre-formulated master mix designed for real-time PCR applications. It contains all the necessary components, including the iTaq DNA polymerase, SYBR Green I dye, dNTPs, and buffer, to perform efficient and reliable quantitative PCR reactions.

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33 protocols using itaq universal sybr green supermix

1

Quantifying Gene Expression in TPCSs

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The expression levels of some genes in related signal pathways of TPCSs on ultra‐hydrogels activated by muscle contraction simulation were verified by a quantitative real‐time PCR, including itgb1, yap, taz, mkx, tnmd, co1a1 and col1a2. For detection of itgb1, yap and taz, at Day 4, the TPSCs cultured on the hydrogels of 0%, 20%, 50% were washed and broken for extracting the total RNA, with reverse‐transcribed into complementary DNA using a PrimeScript RT reagent kit. The expression level of mkx, tnmd, co1a1 and col1a2 were detected from the samples from each group collected at Day 14. qRT‐PCR was carried out by employing iTaq universal SYBR Green supermix (Applied Biosystems, USA) with the gene‐specific primers listed in Table S2, Supporting Information.
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2

Quantifying IGFBP5 Gene Expression by RT-PCR

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Real-time PCR (RT-PCR) was performed with iTaq Universal SYBR Green Supermix in the Applied Biosystems StepOnePlus™ Real-Time PCR System (Foster City, CA, USA) according to the manufacturer’s guidelines. The PCR mix included 10 ​μL of supermix, 2 ​μL of primers (forward and reverse), 4 ​μL of cDNA, and 4 ​μL nuclease-free water. β-Actin was used as the housekeeping gene. The program for RT-PCR was run at 95 ​°C for 30 ​s (polymerase activation and DNA denaturation), at 95 ​°C for 15 ​s (denaturation), and at 60 ​°C for 60 ​s (annealing/extension and plate reading) for 40 cycles. All reactions were run in triplicate. IGFBP5 gene expression was determined by the 2−ΔΔCT method [19 (link)]. Primer sequences were as follows:
IGFBP5
Forward Primer: 5’-AAGAAGCTGACCCAGTCCAA-3’.
Reverse Primer: 5’-GAATCCTTTGCGGTCACAAT-3’.
β-Actin
Forward Primer: 5′-CATGTACGTTGCTATCCAGGC-3′
Reverse Primer: 5′-CTCCTTAATGTCACGCACGAT-3′
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3

Quantitative gene expression analysis of C. albicans

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C. albicans pellets were collected (A600 = 20) and RNA isolated using a Total RNA Mini Kit according to the manufacturer’s instructions. The concentration and purity of the isolated RNA was measured using a NanoDrop 2000 Spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA). In order to remove genomic DNA, samples were treated with DNAse I. The isolated RNA from all samples was brought to an equal concentration (14 ng/μL) and the cDNA was synthesized using a High-Capacity cDNA Reverse Transcription Kit.
The reaction was carried out using specific primers for genes ACT1 (reference gene) and ERG11 as follows: ACT1F (5′-TCCAGCTTTCTACGTTTCCA-3′), ACT1R (5′-GTC AAGTCTCTACCAGCCAA-3′), ERG11F (5′-TTTGGTGGTGGTAGACATA-3′), ERG11R (5′-GAACTATAATCAGGGTCAGG-3′). RT-qPCR reaction was conducted using the iTaq Universal Sybr Green Supermix and the StepOnePlus Real-Time PCR System (Applied Biosystems, Waltham, MA, USA). The initial step of the thermal cycling program was performed at 95 °C for 10 min, followed by 40 cycles at 95 °C for 20 s, 45 °C for 20 s, and 72 °C for 30 s. The determination of gene expression levels was performed as described previously using the 2–∆∆Ct method [39 (link)].
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4

Quantifying Toxoplasma gondii Lifecycle Stages

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Mice with and without delta-6-desaturase inhibitor treatment were euthanized 7 days post infection. The ileum of each mouse was removed and homogenized in 1 mL of TRIzol. Total RNA was isolated according to manufacturer’s protocol (Invitrogen) and treated with amplification-grade DNase I. cDNA was generated using the Invitrogen SuperScript III First-Strand Synthesis kit with random hexamer primers. GRA11B and SAG1 were used as markers of sexual and asexual stages, respectively. The T. gondii housekeeping gene TUB1A was used to normalize target gene expression. Real-time qPCR was performed using Bio-Rad iTaq Universal SYBR Green Supermix on an Applied Biosystems StepOnePlus Real-Time PCR system. The efficiency of each primer set was calculated from the slope of a 1:10 dilution standard curve of tachyzoite gDNA, where E = 10^(−1/slope). The Pfaffl method [37 ], which accounts for differences in efficiencies, was then used to calculate the relative gene expression of GRA11B and SAG1 per sample, in triplicate. Only wells with one melt curve temperature were used, indicating a single product. Primer sequences were as follows:
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5

Quantitative Real-Time PCR for Parasitic Load

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Fecal samples from the mice with and without delta-6-desaturase inhibitor treatment were collected. Genomic DNA was generated from 0.1 g of feces from each mouse using the power soil DNA kit (QIAGEN) according to the manufacturer’s instructions except that cells were broken by a bead beater instead of a vortex. A standard curve was generated using a dilution series of 101–105 parasites per well amplified using the SAG1 primer set described above, based on a genomic DNA sample with known parasite quantity. The Ct values were plotted against the log of the parasite numbers. The number of target gene copies in each sample can be interpolated from the linear regression of the standard curve.
targetgenecopy#=10^(TargetgeneCtyintercept)slope
Real-time PCR was performed on each sample, in triplicate, using Bio-Rad iTaq Universal SYBR Green Supermix on an Applied Biosystems StepOnePlus Real-Time PCR system. The calculated copy numbers of each sample were normalized based on the ng of nucleic acid used as PCR template. Only wells with one melt curve temperature were used, indicating a single product.
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6

Quantitative Gene Expression Analysis

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Total RNA was extracted with TRIzol reagent and reverse transcribed using the RevertAid cDNA Synthesis Kit according to the manufacturer’s instructions. Real-time quantitative PCR assay was performed using iTaq Universal SYBR Green SuperMix and corresponding primers with an Applied Biosystems 7500 Sequence Detection system. The relative mRNA expression of target genes was normalized to the expression level of GAPDH and the quantification result was calculated using the 2−ΔΔct method.
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7

Oxidative stress response in SH-SY5Y cells

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SH-SY5Y cells were treated with compounds and 150 μM H2O2 for 6 h. Then, total RNA was obtained with the Aurum™ Total RNA Mini Kit following the manufacturer's instructions. RNA concentration and purity were determined using a Nanodrop™ 2000 spectrophotometer (Thermo Fisher Scientific). cDNA was synthetized with 0.5 μg of RNA, oligo-dT primers and RevertAid Reverse Transcriptase (Thermo Fischer Scientific), following manufacturer’s instructions. Quantitative PCR was performed using iTaq™ Universal SYBR Green Supermix in a Step-One real-time PCR system (Applied Biosystems). cDNA was amplified with specific primers (Table 1) for catalase (CAT), superoxide dismutase 1 (SOD1), superoxide dismutase 2 (SOD2), glutathione peroxidase 1 (GPx1) and nuclear factor (erythroid-derived 2)-like 2 (Nrf2). Data were analysed with the Step-One software (Applied Biosystems). Ribosomal protein lateral stalk subunit P0 (RPLP0) was used as internal normalization control and relative quantification was performed using ΔΔCt method. Cells treated only with 150 μM H2O2 were used as calibrator. Experiments were carried out in triplicate at least three independent times.
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8

Quantitative Analysis of Gene Expression

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Total RNA was extracted from inflorescences and 14‐d‐old seedlings using TRIzol reagent (Invitrogen). Each experiment included three biological replicates collected from independent plants and three technical replicates for each biological replicate. Reverse transcription was conducted using a Prime Script RT reagent kit with gDNA Eraser (cat. no. RR047A; TaKaRa), the products were then used as the template for quantitative PCR. Primers are listed in Table S1. PCR analysis was conducted using the Step One Plus Real‐Time PCR system (Applied Biosystems, Carlsbad, CA, USA) with iTaq Universal SYBR Green Supermix (cat. no. 72‐5124; Bio‐Rad). The cycle threshold (CT) value of the gene was normalised to CT of the internal control (actin2), and then the relative expression between samples was calculated using delta CT method (Schmittgen & Livak, 2008). The statistical significance of different gene expression levels was using the two‐tailed Student's t‐test.
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9

Transcriptional Analysis of C816, C830, and C800 Effects

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Cells were treated with 0.5, 1 and 2.5 μM C816, C830 and C800 for 24 h. Total RNA was obtained using the Aurum™ Total RNA Mini Kit following the manufacturer's instructions. RNA concentration and purity were determined using a Nanodrop™ 2000 spectophotometer (Thermo Fisher Scientific) and cDNA was synthesized using an oligo-dT and a RevertAid™ M-MuLV reverse transcriptase following the instructions provided by the manufacturer. Real-time PCR was performed using iTaq™ Universal SYBR® Green Supermix in a StepOne™ real-time PCR system (Applied Biosystems) and data were analyzed with the StepOne™ Software (Applied Biosystems). Peptidylprolyl isomerase A gene (PPIA) was used as an internal normalization control and relative quantification between samples was performed using the ΔΔCt method. Each experimental condition was analyzed in triplicate.
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10

Quantifying SaMK and SaPMK Gene Expression

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To investigate the expression levels of SaMK and SaPMK genes in different tissues (roots, sapwood, heartwood, young leaves, mature leaves and shoots) and their expression profiles after MeJA treatment, qRT-PCR was carried out according to the manufacturer’s instructions. About 1.0 μg of total RNA was reverse transcribed into first-strand cDNA using the PrimeScript RT reagent kit (Takara Bio Inc.) according to the manufacturer’s protocols. The reactions were performed by ABI7500 fluorescence quantitative PCR (Applied Biosystems, Thermo Fisher Scientific, Waltham, MA, USA) using iTaq Universal SYBR Green supermix as the buffer (Applied Biosystems). The housekeeping gene, β-actin, was selected as the internal control75 (link) for the normalization of all reactions. All experiments were performed in triplicate and mean values were analyzed. Significant differences (p < 0.05) between means were tested with Duncan’s multiple range test. The 2−ΔΔCT method was used to analyze the relative expression level of genes80 (link).
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