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4 protocols using carboplatin

1

Carboplatin-Resistant Retinoblastoma Cell Line

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The human retinoblastoma cell line Y79 was purchased from Shanghai Zhong Qiao Xin Zhou Biotechnology Co., Ltd. (ZQXZ Biotech, Shanghai, China). The cells were cultured in RPMI-1640 medium containing 10% (v/v) heat-inactivated fetal bovine serum (Gibco, Grand Island, USA) , 2 mM L-glutamine, 100 U/ml penicillin, and 100 μg/ml streptomycin (Gibco, Grand Island, USA) in a humidified atmosphere (95% air, 5% CO2) at 37°C. The carboplatin-resistant RB Y79 (Y79R) cells were established by intermittently exposing the RB cells to a high concentration of carboplatin (10 μg/ml) (APExBIO, Houston, USA) for 24 h and then with a normal medium. After the surviving cells return to normal growth, the next dosing treatment is performed, and this process is repeated for about 8 months to obtain drug-resistant cell lines.
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2

Comprehensive Synthetic Compound Library

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Olaparib (Catalog# A4154), cisplatin (Catalog# A8321), carboplatin (Catalog# A2171), and 5-fluorouracil (Catalog# A4071) were all purchased from APExBIO company. UPF 1096 (Catalog# S8038), NMS-P118(Catalog# S8363), stenoparib (E7449) (Catalog# S8419), niraparib (Catalog# S2741), rucaparib (Catalog# S4948), and veliparib (ABT-888) (Catalog# S1004) were all purchased from Selleckchem.
cisplatin (Catalog# A10221) was purchased from AdooQ Bioscience. ART-558(Catalog# HY-141520), DNA-PK inhibitors PIK-75 hydrochloride (Catalog# HY-13281), Nedisertib (Catalog# HY-101570) and AZD-7648 (Catalog# HY-111783), RAD51 Inhibitor B02 (Catalog# HY-101462), and Olaparib (for in vivo experiment: Catalog# HY-10162) were all purchased from MCE (MedChem Express). ART-812 was synthetized by Dr. Wayne Childers at Temple University School of Pharmacy. All compounds were dissolved, aliquoted, and stored following the manufacturer’s instructions.
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3

Evaluating Platinum-Resistant Endometrial Cancer

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As PbCT is the predominant adjuvant therapy for high-risk EC, which are frequently insensitive to therapy [2 (link), 27 (link)–30 (link)], we chose cell lines recognized as platinum insensitive with identified mutational anomalies associated with adverse clinical outcomes in the study population. ARK2, a uterine serous carcinoma (USC) (type II) derived cell line, harbors mutant TP53 and wt FBXW7 and PPP2R1A (personal communication with A. Santin, Yale University) [31 (link)]. HEC-1B cells (endometrioid endometrial carcinomas [EEC]; type I) have mutations in TP53, FBXW7, and PPP2R1A [32 ]. Both cell lines were cultured in Dulbecco’s Modified Eagle’s Medium containing 10% fetal bovine serum, 100 mcg/mL streptomycin, 100 units/mL penicillin, and 2 mM L-glutamine. Cells were maintained in an incubator at 37°C in an atmosphere containing 5% CO2. Carboplatin and panobinostat (HDAC10 inhibitor) were purchased from ApexBio.
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4

Cell Viability and Apoptosis Assays

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Cells expressing different HA-PKM2 mutants were seeded into 12-well plates, and the cell confluence area was monitored every 4 h over a 3-day period using an IncuCyte Live-Cell Analysis System (Essen Bioscience). To determine cell viability, cells transfected with or without CIP2A siRNA were plated into 96-well plates, and cytotoxic activity was assessed after the indicated drug treatment for 48 h using a Cell Counting Kit-8 (CCK-8; Vazyme) assay. The effects of the indicated compounds (Supplementary Table S3) on the cells were detected by CCK-8 assay, and the potential synergistic effect of the two compounds was calculated by the Bliss model using Combenefit software72 (link). For colony forming activity, the cells were plated into 12-well plates and treated with TEPP-46 and/or 2-DG for 48 h, and fixed with 4% paraformaldehyde and stained with 0.1% crystal violet. To evaluate the effects of CIP2A overexpression on cell apoptosis, H1299 cells were transiently transfected with empty vector or Flag-CIP2A, and 24 h later the cells were treated with 0.3 mM carboplatin (APExBIO, Houston, TX, USA) for another 24 h. The cells were stained with Annexin V/FITC-propidium iodide Apoptosis Detection kit (APExBIO, Houston, TX, USA) and analyzed by flow cytometry (BD Biosciences, San Jose, CA, USA).
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