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7 protocols using ly6c clone hk1.4

1

Dissection and Flow Cytometric Analysis of Immune Cells

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Whole blood was collected via cardiac puncture from euthanized animals. Red blood cells were lysed using ACK lysis buffer (Fisher, Cat#A1049201), and then the remaining cells were stained with fluorochrome-conjugated antibodies. Skin tissues were digested as described in the protocol above. Single cell suspensions were stained with fluorochrome-conjugated antibodies. Data were analyzed by FlowJo v10.8 (DB Life Sciences). The following antibodies and dyes were used: CD45 (clone 30-F11; BD Biosciences Cat# 564279), CD11b (clone M1/70; Thermo Fisher Scientific Cat# 45–0112-80), CD115 (clone AFS98; Thermo Fisher Scientific Cat# 12–1152-81), Ly6C (clone HK1.4; Thermo Fisher Scientific Cat# 47–5932-80), Ly6G (clone 1A8, BD Biosciences Cat# 565369), F4/80 (clone BM8, Thermo Fisher Scientific Cat# 17–4801-80), Live/Dead Aqua or Violet fixable stains (Life: L34964, NC0180395).
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2

Immune cell isolation and analysis

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Graft tissue was digested and single-cell suspensions were prepared as previously reported (6 (link)). Following red blood cell lysis, cells were stained with fluorochrome-labeled antibodies against CD45.2 (clone 104; Biolegend), CD45.1 (clone A20; Biolegend), Ly6G (clone 1A8; Thermo Fisher Scientific), CD11b (clone M1/70; Thermo Fisher Scientific), Ly6C (clone HK1.4; Thermo Fisher Scientific), CD115 (clone AFS98; Thermo Fisher Scientific), and isotype control antibodies (BD Biosciences; BioLegend). Data were acquired on an Attune NxT Acoustic Focusing Cytometer (Thermo Fisher Scientific) and analyzed with FlowJo v10 software.
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3

Murine Myeloid Immune Cell Staining

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Primary antibodies specific for murine CD11c (clone N418), CD206 (MMR) (clone C068C2), CD115 (CSF-1R) (clone AFS98), Dectin-1 (CLEC7A) (clone RH1), MHC class I and MCH class II (I-Ab) (clone AF6-120) were from Biolegend (San Diego, CA). Ly6C (clone HK1.4) was purchased from Ebioscience and CD36 (clone CRF D2712), CD25 (clone PC61), CD4 (clone RM4-5) and CD8 (clone 53.6.7) were purchased from BD-Bioscience (San Jose, CA). DQ ovalbumin, OVA-Alexa 647, Dextran Alexa Fluor® 488 (mw 10,000) Anionic Fixable, Staphylococcus aureus (wood strain without protein A) BioParticles®, Alexa Fluor® 488 conjugate pHrodo® Green Escherichia coli BioParticles® were purchased from Molecular Probe (Eugene, Oregon). Nigericin sodium salt was purchased from Enzo Life sciences (Farmingdale, New York). Monensin sodium salt was purchased from Amresco (Solo, Ohio).
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4

Multiparametric Flow Cytometry Immunophenotyping

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Aliquots of 1 × 106 cells were stained with different monoclonal antibodies according to standard protocols. The cells were analyzed on a FACSVerse cytometer (BD Biosciences, San Diego, CA, USA). Fluorescent antibodies of CD45 (clone 30-F-11), CD3ε (clone 145-2C11), CD4 (clone GK1.5), CD83 (clone Michel-19), CD11b (clone M1/70), ly6c(clone HK1.4), F4/80 (clone BM8), B220 (clone RA3-6B2), NK1.1 (clone PK136), MHC-II (clone M5/114.15.2), CD11c (clone N418), CD69 (clone H1.2F3), and Ki67 (clone B56) conjugated with the corresponding fluorescent dyes (eBioscience, San Diego, CA, USA) were used in the experiments.
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5

Isolation and Analysis of Hepatic Immune Cells

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Fresh liver was perfused with 5 mL of saline through the portal vein at 100‐300 mg, then digested with Roswell Park Memorial Institute 1640 medium with deoxyribonuclease I and collagenase IV at 37oC. After digestion, hepatocytes were pelleted and discarded by centrifugation at 50g for 5 minutes. Nonparenchymal cells were washed with Roswell Park Memorial Institute 1640 medium and pelleted by centrifugation at 350g for 15 minutes, then washed and blocked with 10% mouse serum for 30 minutes. Antibodies against cluster of differentiation 11b (CD11b; clone M1/70; Ebioscience, Hatfield, UK), Ly‐6C (clone HK1.4; Ebioscience), CD45.2 (clone 104; Ebioscience), F4/80 (dilution 1:50; clone BM8; Invitrogen), and Ly‐6G (clone 1A8; Biolegend, San Diego, CA) were added for 30 minutes in a dilution of 1:100 unless otherwise specified. Cell viability was assessed with Fixable Viability Dye eFluor780 (Ebioscience) according to the manufacturer's protocols. Cells were formalin‐fixed and analyzed by flow cytometry using a BD LSR Fortessa II (BD Bioscience, Oxford, UK).
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6

Multiparameter Flow Cytometry of Immune Cells

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Bone marrow cells were flushed from the femurs and tibias with PBS with a syringe. The spleen samples were processed through mechanical dissociation, and tumour tissues were processed into single-cell suspensions by dissociating the tissues enzymatically for 1 h with 1 mg/ml type I collagenase (Sigma-Aldrich) in the presence of 50 units/mL DNase (Sigma-Aldrich). The cells were lysed with red blood cell lysis buffer and filtered with a 100 μm membrane, further washed with 1% BSA in PBS and blocked by non-specific staining with Fc Block (anti-mouse CD16/32 mAb; BD Biosciences). The samples were then stained with fluorescence-conjugated antibodies against the surface markers CD45 (clone 30-F11, eBioscience), CD11b (clone M1/70, eBioscience), Ly6C (clone HK1.4, eBioscience), Ly6G (clone 1A8-Ly6g, eBioscience), CD3 (clone 145-2C11, eBioscience) and CD8 (clone 53–6.7, eBioscience) and detected using flow cytometry (LSR BD Fortessa).
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7

Flow Cytometry Analysis of Tumor Cell Lines

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GD2 expression on tumor cell lines was performed using the anti-GD2 (clone 14g2a; BD Pharmingen) and compared to isotype controls. T-cell transduction was measured using the 14g2a anti-idiotype, clone 1A7 (Biological Research Branch of NCI) conjugated to Dylight 650 or 488 (Pierce Protein Biology Products). T-cell phenotypes were identified using the following antibodies to human CD4 (clone OKT4; eBioscience), human CD8 (clone RPA-T8; eBioscience), human CD45 (clone H130; eBioscience), human PD-1 (clone eBioJ105, eBioscience), human TIM-3 (clone F35-2E2, eBioscience), and human LAG-3 (clone 3DS223H, eBioscience). MDSCs were evaluated using antibodies to Ly6C (clone HK1.4; eBioscience), Ly6G (clone 1A8; eBioscience), CD11b (clone M1/70; eBioscience). All antibodies were used per manufacturers recommendations. Live/dead cells were distinguished with Fixable Viability Dye eFluor 780 or 506 (eBioscience). Flow cytometry was done using FACS Fortessa with FACS Diva software (BD Biosciences) and analyzed by FlowJo 9 software (Treestar).
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