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8 protocols using anti caspase 3

1

Protein Expression Analysis by Western Blot

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Western blotting analysis was performed as described previously [24 (link)]. The antibodies used in this study were all purchased from Affinity Biosciences, as follows: anti-GRP78 (Cat# AF5366), anti-DDIT/CHOP (Cat# DF6025), anti-mTOR (Cat# AF6308), anti-phospho(P)-mTOR (Cat# AF3308), anti-P-p70S6 (Cat# AF6226), anti-P-p70S6 kinase (Thr389/Thr412) (Cat# AF3228), anti-pan-Akt1/2/3 (Cat# AF6261), anti-P-pan-Akt1/2/3 (Ser473) (Cat# AF0016), anti-P-IRE1 (Ser724) (Cat# AF7150), anti-JNK1/2/3 (Cat# AF6318), anti-P-JNK1/2/3 (Thr183+Tyr185) (Cat# AF3318), anti-caspase-3 (Cat# AF6311), and anti-BCL-2 (Cat# AF6139) antibodies. Anti-beta actin (β-actin) (Cat# AF7018) and anti-COX IV (Cat# AF5468) antibodies were used as loading controls.
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2

Western Blot Analysis of Apoptosis Markers

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Cells were lysed in prechilled RIPA buffer containing phosphatase inhibitors, protease inhibitors and PMSF. The protein extracts were loaded on each line of a 10% SDS-PAGE gel and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Darmstadt, Germany). The membranes were blocked in 5% skimmed milk in 1 × PBS-T (0.5% Tween-20) and incubated overnight at 4°C with the following primary antibodies: anti-SLC25A21 (1:500; Affinity Biosciences), anti-cytochrome C (1:500; Affinity Biosciences), anti-caspase-9 (1:800; Affinity Biosciences), anti-cleaved caspase-9 (1:800; Affinity Biosciences), anti-caspase-3 (1:800; Affinity Biosciences), and anti-cleaved caspase-3 (1:800; Affinity Biosciences). Anti-tubulin (1:1000; Proteintech Group, Wuhan, China) was used as protein-loading control. Blots were incubated with HRP-conjugated secondary antibodies for 1 h at room temperature, and visualized with ECL Western Blotting Substrate (ThermoFisher Scientific).
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3

Hippocampal Protein Extraction and Western Blot Analysis

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The total protein was extracted from hippocampus tissue using a radio-immunoprecipitation assay (RIPA) buffer containing protease inhibitors (Abmole biotechnology, Shanghai, China). The 20 μg extracted proteins were separated by 10% SDS-PAGE (Bio-Rad) and transferred onto polyvinylidene fluoride (PDVF) membrane (Millipore, Billerica, MA, USA). The membrane was blocked with 5% nonfat dry milk for 2 h and incubated overnight at 4°C with the relevant primary antibodies. The primary antibodies were anti-BDNF(1 : 1000, novus biologicals, Beijing, China), anti-caspase-3 (1 : 1000, Affinity, Liyang, China), anti-Bax (1 : 1000, Abcam, Cambridge, UK), anti-Bcl-2 (1 : 1000, Abcam, Cambridge, UK), anti-p-CREB (1 : 1000, Cell Signaling Technology, MA, USA), anti-TrkB(1 : 1000, Cell Signaling Technology, MA, USA), and anti-p-Akt (1 : 2000, Cell Signaling Technology, MA, USA). The membrane was incubated with the horseradish peroxidase (HRP)-conjugated goat anti-rabbit immunoglobulin G (IgG) (1 : 20,000, Abbkine, Wuhan, China). The membrane was visualized by the proteins by ECL reagent and analyzed by ImageJ software. Rabbit anti-rat β-actin (1 : 2000, Abbkine, Wuhan, China) was used as an internal control.
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4

Western Blot Quantification of HPV Proteins

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Western blot was performed as described in previous study17 (link). Rabbit anti-HPV16-L1, anti-HPV16-E6, anti-HPV16-E7 (R&D, USA), Rabbit anti-P53, anti-Bax, anti-Caspase9, anti-Caspase3, anti-cleaved-Caspase3 and anti-β-actin (Affinity, China) were used as the primary antibodies. After being incubated with secondary-HRP-antibodies (Promega, USA), the protein levels were detected with BCIP/NBT Alkaline Phosphatase Color Development Kit (Beyotime, China) and the densities of the specific bands were quantified with an imaging densitometer (Tanon, China).
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5

OSCC cell lines: ER stress and apoptosis

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OSCC cell lines (HSC-3 and HN12) were obtained from the Japanese Collection of Research Bioresources (JCRB) Cell Bank. The cells were routinely cultured in high glucose DMEM supplemented with 10% fetal bovine serum (Invitrogen Life Technologies, Carlsbad, CA, United States) and 1% antibiotics at 37°C in a 5% CO2 incubator. The primary antibodies anti-PERK, anti-p-PERK, anti-eIF2α, anti-p-eIF2α were purchased from Cell Signaling Technology (1:1000, United States). The primary antibodies anti-ATF4, anti-caspase-3, anti-cleaved-caspase-3, anti-Bcl2, anti-Bax were obtained from Affinity (1:500, United States). Antibodies α-tubulin, anti-HSP60, anti-IF1, anti-VDAC, and anti-CHOP were obtained from Abcam (1:1000, Cambridge, MA). The OXPHOS complexes were obtained from Thermo Fisher Scientific (1:1000, United States). Antibody p-Ser was obtained from Abcam (1:1000, AP0932, China). Goat anti-rabbit/mouse secondary antibody was purchased from ZSGB-BIO (Beijing, China). Nebivolol was purchased from Selleck (Shanghai, China). 4-Phenylbutyrate (4-PBA) was purchased from Sigma-Aldrich (St. Louis, MO, United States). MitoTracker Red was obtained from Solarbio (Beijing, China).
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6

Immunofluorescence Analysis of GBC-SD Cells

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GBC-SD cells were fixed in 4% paraformaldehyde, and then probed with the primary antibodies including anti-caspase 3 (No. AF6311, 1:200, Affinity Biosciences, Cincinnati, OH, USA), anti- E-cadherin (No. 20874-1-AP, 1:300, Proteintech, Rosemont, IL, USA), anti-N-cadherin (no. ab18203, 1:200; Abcam, Cambridge, UK), ant-vimentin (no. BM0135, 1:200, BosterBio, Pleasanton, CA, USA) overnight at 4°C. Thereafter, cells were then probed with corresponding secondary antibodies (no. BA1031, BA1032, 1:100, BosterBio) for 1 h at 37°C. Subsequently, cells were photographed under a BX35 OLYMPUS fluorescence microscope (objective: 20x). 10 μg/mL of DAPI was used for staining the nuclei in the dark for 30 min at room temperature. This assay was repeated in triplicate. Sections lacking primary antibody were used as the negative control.
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7

Western Blot Analysis of mTOR Pathway

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CD4+ T cells lysate was prepared by lysing in RIPA buffer containing protease inhibitors. Protein concentrations were estimated (BCA protein assay kit). After that, the protein samples were loaded onto each lane by SDS-PAGE for electrophoresis and transferred to 0.45 μM PVDF membrane (Millipore, MA, USA). Next, PVDF membranes were blocked with 5% skimmed milk in TBS-Tween for 60 min, followed by incubation with antibody at 4°C for 12-16 h. The following primary antibodies are as follows: anti-mTOR (Cat#AF6308, dilution rate 1 : 1000), anti-P-mTOR (Cat#AF3308, 1 : 1000), anti-P-p70s6k (Cat#AF3228, 1 : 1000), anti-p70s6k (Cat#AF6226, 1 : 1000), anti-4EBP (Cat#AF6432, 1 : 1000), anti-caspase-3 (Cat#AF6311, 1 : 1000), anti-Bcl-2 (Cat#AF6139, 1 : 1000), anti-Bax (Cat#AF0120, 1 : 1000), anti-GRP78 (Cat#AF5366, 1 : 1000), anti-CIRP (Cat#DF2643, 1 : 1000), anti-CHOP (Cat#DF6025, 1 : 1000), anti-CIRP (Cat#AF5366, 1 : 1000), and anti-actin-β (Cat#AF7018, 1 : 3000) were purchased from Affinity Biosciences (Jiangsu, China). Anti-P-4EBP (anti-eIF4EBP1, ab27792) was from Abcam (CA, USA). After washing with TBS-Tween 3 times, the membranes were incubated with a goat anti-rabbit IgG antibody (1 : 5000, Affinity Biosciences) at 25°C for 1 h, and the chemiluminescence signals were detected using an electrochemiluminescence detection system. Band densities were quantified by the ImageJ software.
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8

Western Blot Analysis of Apoptosis Markers

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Cells were lysed in prechilled RIPA buffer containing phosphatase inhibitors, protease inhibitors and PMSF. The protein extracts were loaded on each line of a 10% SDS-PAGE gel and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Darmstadt, Germany). The membranes were blocked in 5% skimmed milk in 1 × PBS-T (0.5% Tween-20) and incubated overnight at 4 °C with the following primary antibodies: anti-SLC25A21 (1:500; Affinity Biosciences), anti-cytochrome C (1:500; Affinity Biosciences), anti-caspase-9 (1:800; Affinity Biosciences), anti-cleaved caspase-9 (1:800; Affinity Biosciences), anti-caspase-3 (1:800; Affinity Biosciences), and anti-cleaved caspase-3 (1:800; Affinity Biosciences). Anti-tubulin (1:1000; Proteintech Group, Wuhan, China) was used as protein-loading control. Blots were incubated with HRP-conjugated secondary antibodies for 1 h at room temperature, and visualized with ECL Western Blotting Substrate (ThermoFisher Scientific).
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