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5 protocols using anti goat irdye 800cw

1

Quantifying Protein Expression in Fixed hMPCs

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Fixed hMPCs were permeabilized with 0.1% Triton in PBS. Cells were incubated in primary antibodies, specific for PYY (ab22663, Abcam, Supplementary Figure S2) and Y1r, Y2r, and Y5r diluted (PYY, 1:1000; Y receptors, 1:100) in Odyssey Blocking Buffer (LI-COR), overnight at 4°C. Cells were washed with 0.1% PBST and incubated at room temperature in secondary antibody (IRDye® 800CW anti-rabbit, LI-COR or IRDye® 800CW anti-goat, LI-COR) diluted 1:400 in Odyssey Blocking Buffer. Fluorescence intensity, representing protein levels, was measured using the Odyssey Imaging System (LI-COR). Protein levels were normalized to number of cells via Hoechst 33342 staining and counting using the Celigo® Imaging Cytometer (Nexcelom Bioscience).
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2

Mouse Kidney Renin Regulation Assay

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Diethylamine NONOate (NO donor) was purchased from Enzo Life Sciences (Cat # ALX-430-014-M005, Farmingdale, NY, United States). L-NAME (NOS inhibitor, Cat # N5751), Calphostin C (protein kinase C – PKC – inhibitor, Cat # 20785), and ODQ (soluble guanylyl cyclase inhibitor, 1H-(1,2,4)oxadiazolo[4,3-a]quinoxalin-1-one, Cat # O3636) were purchased from Sigma-Aldrich (Saint Louis, MO). A selective protein kinase G (PKG) inhibitor, KT5823, was purchased from TOCRIS (Cat # 1289, Bristol, United Kingdom).
We used a mouse anti-renin polyclonal IgG B-12 antibody (sc-81178) for detection of renin, and ß-actin was detected using a goat anti- ß-actin monoclonal IgG antibody (sc-1615), both purchased from Santa Cruz Biotechnology, (Santa Cruz, CA, United States). For western blot procedures the secondary antibodies used were the IR Dye 800CW anti-goat and mouse according to the primary antibody chosen (Li-Cor Bioscience, NE, United States). For immunofluorescence, we utilized a mouse anti-renin polyclonal IgG H-105 antibody (sc-22752–1:200), and secondary Alexa Fluor antibodies (Alexa fluor-488), both purchased from Life Technologies (Carlsbad, CA, United States). The mouse kidney cortical CD cells (M-1 cell line) were purchased from American Type Culture Collection (Cat: CRL-2038, ATCC, Manassas, VA, United States).
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3

Quantitative Western Blotting of Mouse Corneas

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Western blotting was performed as described before.22 (link) Briefly, protein extracts of mouse corneas were prepared in a radioimmunoprecipitation (RIPA) buffer supplemented with 1% SDS and Halt protease and phosphatase inhibitor cocktail (Thermo Fisher Scientific, Waltham, MA, USA). Four corneas were pooled and considered one biological replica. Protein concentration was determined by Bradford-based protein assay (Bio-Rad protein assay). Equal amounts of lysates (30 μg protein) were subjected to electrophoresis in 4% to 15% gradient SDS-PAGE gels (Bio-Rad, Hercules, CA, USA). Protein blots of the gels were blocked with Odyssey blocking buffer (OBB; Li-Cor Biosciences, Lincoln, NE, USA) and incubated overnight with primary antibodies: rabbit anti-α-SMA (ab5694, 1:2000 dilution in OBB; Abcam, Cambridge, MA, USA), goat anti-connective tissue growth factor (CTGF) (clone L-20, 1:500 dilution in OBB; Santa Cruz Biotechnology, Dallas, TX, USA), and mouse anti-β-actin (clone AC-15, 1:10,000 dilution in OBB; Santa Cruz Biotechnology). The secondary antibody used was anti-rabbit IgG IRDye 800CW, anti-goat IRDye 800CW, and anti-mouse IgG IRDye 680LT (1:10,0000 dilution in OBB; Li-Cor Biosciences). Blots were then scanned with the Odyssey Infrared Imaging System, and relative band intensity was quantified by Image Studio v2.0 software (Li-Cor Biosciences).
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Peptide-based Affinity Purification of Membrane Proteins

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Protein pull-down assay was performed as described.26 (link) Cells were disrupted in PBS containing protease inhibitors (PI) cocktail with a Dounce homogenizer; centrifugation (15,000 × g for 30 min at 4°C) was performed to separate soluble proteins from membrane pellet. Membrane proteins were solubilized in PBS containing 1 mM CaCl2, 1 mM MgCl2, 50 mM n-octyl-beta-D-glucopyranoside, and PI cocktail (column buffer). Six milligrams of a cysteine-cyclized peptide was coupled onto 250 μL of Affigel 10 (Bio-Rad), and the column was equilibrated with column buffer containing 1% Triton X-100. Peptide-coupled resin (10 μL) was incubated with 30 μg of membrane extract and washed with column buffer. Elution was performed with SDS-PAGE loading buffer. Protein preparations resolved on SDS-PAGE were blotted onto Immobilon-FL membrane (Millipore), blocked with Odyssey blocking buffer (LI-COR Biosciences), and probed (in PBS/0.05% Triton X-100) with 1:1,000 goat anti-DCN (R&D Systems). Signal was detected by Odyssey imaging system using anti-goat IRDye 800CW (LI-COR Biosciences). NS0-expressed murine DCN was from R&D Systems.
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5

Western Blot Antibody Validation

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Primary antibodies included: anti-TREX1 (1:1,000 dilution) (Abcam, ab185228), anti-β-actin (1:2,000 dilution) (Abcam, ab8224), anti-RPA32 (1:1,000 dilution) (Abcam, ab2175), anti-flag (1:2,000 dilution) (Abcam, f1804) and anti-HSP60 (1:1,000 dilution) (Santa Cruz Biotechnology, sc-1052).
Secondary antibodies (1:10,000â€"15,000 dilution) included: goat anti-mouse IgG HRP (Thermo Fisher Scientific, 31432), donkey anti-rabbit IgG HRP (SouthernBiotech, 6441-05), anti-rabbit secondary antibody IRDye 800 CW (LI-COR Biosciences, 926-32213) and anti-goat IRDye 800 CW (LI-COR Biosciences, 926-32214).
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