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4 protocols using hoechst 33342

1

Cryosectioning and Nuclei Staining of Tumors

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The excised tumors were fixed in 4% paraformaldehyde overnight. The tumors were then dehydrated sequentially in 10% and 20% sucrose solutions. A small piece of each tumor was imbedded in Tissue‐Tek O.C.T. compound (Sakura Finetek Japan, Tokyo, Japan) and then frozen. Slices of 6‐μm thickness were sectioned with a cryostat (Leica CM1900; Leica Microsystems, Wetzlar, Germany). After staining of the nuclei with Hoechst 33342 (Cambrex, East Rutherford, NJ, USA), the frozen sections were observed with a confocal microscope.
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2

Immunofluorescence Staining of Myc-tagged NiV V, UBXN1 and HA-tagged UBXN1

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At 24 h posttransfection, the cells were fixed with 4% paraformaldehyde for 30 min. After the cells were washed three times with PBS, they were incubated in blocking buffer (3% bovine serum albumin, 0.1% Triton X-100 in PBS) at room temperature for 30 min. For the staining of myc-tagged NiV V, UBXN1 and HA-tagged UBXN1, anti-myc rabbit polyclonal antibody (Sigma), anti-myc mouse monoclonal antibody (Clontech), anti-UBXN1 rabbit polyclonal antibody (Millipore) and anti-HA mouse monoclonal antibody (Sigma) were incubated with the cell in blocking buffer at 4 °C for over night. For control staining, rabbit serum was used. After the cells were washed three times with wash buffer (0.05% Tween 20 in PBS), they were incubated with Alexa-Fluor-488-conjugated goat anti-rabbit antibody (Invitrogen), Alexa-Fluor-568-conjugated goat anti-mouse antibody (Invitrogen), and Hoechst 33342 (Cambrex) in blocking buffer at room temperature for 1 h. After the cells were washed three times, their immunofluorescence was observed with an IX70 laser confocal microscope and the FluoView FV1000 system (Olympus).
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3

Immunohistochemical Analysis of Viral Proteins

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Tumour tissues were fixed in 4% PFA overnight at 4 °C, embedded in Tissue-Tek OCT compound (Sakura Finetechnical Co., Ltd, Tokyo, Japan), and frozen in liquid nitrogen. The tissues were cut into 6 μm thick sections, fixed in acetone, washed in phosphate-buffered saline, and blocked with hydrogen peroxide. The sections were then incubated with anti-MV-nucleocapsid (N) protein pAb, which was produced in our laboratory33 (link), and secondary antibody (Envision HRP kit; Dako). Positive reactions were identified by incubating them with DAB reaction solution. As a negative control, species-matched and filtered sera were used instead of primary antibodies. Images were captured with a Nikon microscope (Nikon, Melville, NY). The sections were fixed for fluorescence microscopy in acetone and stained with Hoechst 33342 (Cambrex Bio Science Walkersville Inc., Walkersville, MD) diluted 1:10,000, and were mounted in Dako Glycerol Mounting Medium. Images were taken on an FV1000 microscope.
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4

Immunohistochemistry and Flow Cytometry Protocol

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Immunohistochemistry on tissue sections was performed as described previously [8 (link)]. For double labelling in immunohistochemistry and flow cytometric analysis CTA 157-2 was linked to NHS-Rhodamine (Pierce, Rockford, IL) or NHS-Dye 680 (MoBiTec), respectively, using protocols provided by the manufacturers. After fixing the cells either with ethanol 70% at pH 2 or with acetone : methanol 1 : 1 followed by blocking with 1% FCS in PBS they were treated with primary antibodies for 45 minutes at 37°C. Secondary antibodies were incubated for 45 minutes at 37°C. Nuclei were stained with 1 μg/mL Hoechst 33342 (Cambrex, Verviers, Belgium). Double staining was analyzed with a confocal laser scanning microscope (Zeiss, Oberkochen, Germany). Staining with labeled CTA 157-2 was performed either before or after permeabilization as indicated.
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