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Quantum ls imaging energy filter

Manufactured by Ametek

The Quantum-LS imaging energy filter is a laboratory equipment designed to select and filter specific energy levels within a sample. Its core function is to enable high-resolution energy-filtered imaging and spectroscopy.

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2 protocols using quantum ls imaging energy filter

1

Cryo-EM Data Acquisition on FEI Titan Krios

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Cryo-EM data were collected on a FEI Titan Krios (Thermo Fisher Scientific) transmission electron microscope, operated at 300 kV and equipped with a Quantum-LS imaging energy filter (GIF, 20 eV zero loss energy window; Gatan Inc.) and a K2 Summit direct electron detector (Gatan Inc.) operated in dose fractionation mode. Data acquisition was controlled by the SerialEM15 software, performed in counting mode, with a 42 e2 total exposure fractioned into 40 frames over 8 s. The physical pixel size was 0.639 Å at the sample level. The data were pre-processed via the FOCUS package38 (link), including drift-correction and dose-weighting using MotionCor239 (link) (grouping every 5 frames and using 3 × 3 tiles) and CTF estimation using CTFFIND440 (link) (using information between 30 Å and 5 Å from the movie stacks). With these settings, we collected two datasets: one using beam-image shift14 (link), with three shots per grid hole, comprising 2243 movies, and a second one taking a single shot per hole, with 2252 movies. Detailed data collection information are given in the Supplementary Table S1.
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2

Cryo-EM Structure Determination of PTCH1 and SHH-PTCH1 Complex

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Apo-PTCH1 nanodisc and GAS1–SHH–PTCH1 complex nanodisc samples were concentrated to ~1 mg/mL. A sample of 3 μL was loaded onto a glow-discharged holey carbon grid (Quantifoil R1.2/1.3, copper, 300 mesh). All the grids were blotted for 4 s at 16 °C and 100% relative humidity using an FEI Vitrobot Mark IV plunger before being plunge-frozen in liquid nitrogen–cooled liquid ethane. Cryo-EM data were collected using a Titan Krios G3 electron microscope (Thermo Fisher Scientific) operated at 300kV. Micrographs were acquired at the nominal magnification of 130,000x (calibrated pixel size of 1.06 Å on the sample level) using a K2 Summit camera (Gatan) equipped with a Quantum LS imaging energy filter (Gatan) with the slit width set at 20 eV. The dose rate on the camera was set to 8 e‒/pixel/s. The total exposure time for each micrograph was 10 s fractionated into 50 frames with 0.2-s exposure time for each frame. The data collection was automated using the Leginon software package (Suloway et al., 2005 (link)). A total of 26,139 micrographs from 3 data collection sessions were collected for the apo-PTCH1 sample, and a total of 5,571 micrographs were collected from 2 data collection sessions for the GAS1–SHH–PTCH1 complex sample.
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