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Triple quad 5500 lc ms ms system

Manufactured by AB Sciex
Sourced in United States

The Triple Quad 5500 LC-MS/MS system is a high-performance liquid chromatography-tandem mass spectrometry (LC-MS/MS) instrument designed for quantitative and qualitative analysis. The system combines a triple quadrupole mass analyzer with a high-pressure liquid chromatography (HPLC) module, enabling the separation, detection, and measurement of a wide range of analytes in complex samples.

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11 protocols using triple quad 5500 lc ms ms system

1

Quantification of Metabolic Markers

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Commercially available ELISA kits were used to measure the concentrations of D-dimer (MBS723281, MyBioSource), HMGB1 (ST51011, IBL International), and SQSTM1 (ADI-900-212, Enzo) in the indicated samples. Measurement of ALT and BUN in the plasma was performed using a Catalyst Dx Chemistry Analyzer (IDEXX). Intracellular itaconate concentration was assayed by a liquid chromatography-tandem mass spectrometry (LC-MS/MS) method (Tan et al., 2020 (link)). In short, to minimize the chance of cell metabolite degradation, cells were lysed by adding ice-cold 80% methanol/water (v/v). The internal standard solution (13C5-itaconate; sc-495554, Santa Cruz) was also prepared in 80% methanol/water. Samples and standards were analyzed using a Triple Quad 5500 LC-MS/MS system (SCIEX).
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2

Fibroblast PI Incorporation and MMUT Activity

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PI into acid-precipitable material of primary fibroblasts was assessed according to a protocol described previously42 (link) with modifications as described20 . MMUT enzyme activity assay was performed in fibroblast crude cell lysates as originally described43 ,44 (link) using recent modifications8 (link). MMUT enzyme activity in HEK cells was measured using the same protocol but without radiolabeled substrate (instead only 1 mM of methylmalonyl-CoA was used, Sigma M1762) and final succinate determination was performed by HPLC separation and electrospray ionization (ESI) tandem mass spectrometry (MS/MS) detection (SCIEX TripleQuad 5500 LC–MS/MS System).
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3

Quantifying Ascorbic Acid in Kiwifruit

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Kiwifruit pericarp tissues from three independent biological/pooled samples were lyophilized and ground into fine powders. 0.1 g freeze-dried powders were extracted with 1mL 80% methanol/water (v/v) containing 0.1% formic acid. The mixture was vortexed for 30 sec, sonicated at 4°C for 20 min, vortexed again for 30 sec, centrifuged (14,000g, 10 min, 4°C), and filtered through a 0.2-mm polytetrafluoroethyle ne Reduced AsA and total AsA contents were measured as previously described (Liu et al., 2016) . In brief, 0.5g freeze-dried sample powders were extracted with 10 mL 1% oxalic acid at 4 °C for 12 hours and centrifuged (14,000g, 10 min, 4 °C). To determine the total AsA level, 1 mL of the supernatant was transferred to a 2-ml Eppendorf tube containing 10 uL of 5 mmol dithiothreitol (DTT) and incubated at 4 °C for 1 hour to convert the oxidized ascorbate into the reduced form. Supernatants were collected and filtered before the LC-MS analysis was performed using the SCIEX Triple Quad 5500 LC-MS/MS System. To assay reduced AsA, DTT was replaced by the same volume of potassium phosphate buffer (pH 7.4), while the rest of the procedure was the same as for the total AsA assay. All samples were analyzed in three independent biologic a l replicates.
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4

Metabolic Profiling of Mouse Tissues

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Urine was collected in the morning after one night in a metabolic cage. The sediment was removed, and supernatant was flash frozen in liquid nitrogen. Tissue samples were harvested from mice aged 58 to 63 days. Animals were anesthetized by sevoflurane. Portal blood was taken and kept on ice to coagulate, centrifuged at 4°C and snap frozen in liquid nitrogen directly after. Liver, kidneys, heart, and brain were harvested and snap-frozen in liquid nitrogen. After the procedure, the mice were directly euthanized by cervical dislocation. All samples were stored at -80°C prior to analysis. the supernatant was transferred into a fresh vial. Final succinate determination was performed by HPLC separation and electrospray tandem mass spectrometry (ESI-MS/MS) detection (SCIEX TripleQuad 5500 LC-MS/MS System).
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5

Quantification of GABA in LAB Strains

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By comparative genome mining, a strain-specific gene, gadB, was identified as the potential antiviral metabolite of L. fermentum PV22. Therefore, quantification of γ-aminobutyric acid (GABA) in MNTDs of LAB strains was performed to validate the result of genome mining. Quantification of GABA was done using AB SCIEX Triple Quad 5500 LC-MS/MS system (Sciex, Framingham, MA, USA) as described by Bottiglieri (44 ). In brief, MNTDs were diluted 1:1 with a 40% acetonitrile/40% methanol solution and hydrolyzed before being injected into the Triple Quad liquid chromatography-tandem mass spectrometry (LC-MS/MS) system. Each assay was quantified using a five-point standard curve and was linear from 0.63 to 80 μM for total GABA; the quantification of GABA in each MNTD was done using the Analyst software of AB SCIEX Triple Quad 5500 LC-MS/MS system.
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6

Quantitative Analysis of Phytohormones and Oxylipins

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For JA analysis, the samples (100–200 mg) were extracted twice with 80% cold methanol (v/v) overnight at 4 °C. To each sample was added 10 ng (±)-9,10-dihydro-JA (Olchemim) as an internal standard. The combined extract was evaporated to the aqueous phase with N2, dissolved in 0.4 ml methanol and then filtered using a syringe-facilitated filter (Nylon 66; Jin Teng Experiment Equipment Co., Tianjin, China). The samples were stored at −80 °C before the measurements. The JA levels were quantified using an HPLC-MS/MS system (AB SCIEX Triple Quad 5500 LC/MS/MS) with JA (Sigma) as the external standards. For JA-Ile and SA analysis, the JA-Ile and SA levels were quantified with JA-Ile and SA (Sigma) as the external standards. To estimate the oxylipins levels, the samples were obtained and extracted as described for phytohormone analysis. The supernatants were analysed using an HPLC-MS/MS system (AB SCIEX Triple Quad 5500 LC/MS/MS system) with 9- or 13-HPOD, 9- or 13-HPOT, 9- or 13-HOD, 9- or 13-HOT or 9- or 13-KOD (Cayman Chemical Co) as the external standard.
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7

Quantification of Circulating Sphingolipids

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CS levels in mouse and human plasma were determined using liquid chromatography tandem-mass spectrometry (LC-MS/MS) as previously described (Bandaru and Haughey 2014 (link)). Briefly, 30 μL of plasma was mixed with 120 μL of honokiol internal control solution (honokiol dissolved in methanol, 200 ng/ml). After centrifugation at 10,000 g for 15 min, 0.2 μL of the supernatant was injected into a Shimadzu LC-20AD HPLC. Chromatography was conducted using an Agilent Extend 5 μM C18 column (Agilent Technologies, Inc., Santa Clara CA, United States) with solvent A (pure methanol) and solvent B (0.01% ammonia) under the gradient conditions of 60% A at 0–1 min and gradient to 95% A at 1–2.2 min at a flow rate of 0.5 ml/min. Quantification of CS was performed on an AB SCIEX Triple Quad 5500 LC/MS/MS system (AB SCIEX, United States) by multiple reaction monitoring (MRM) using Analyst 1.6.2 software (Applied Biosystems). CS stock solution with a concentration range of 0.5 ∼3.0 μg/ml was used as an internal standard, and calibration curves were plotted using the peak area ratios of CS to honokiol (internal control).
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8

Quantification of Cellular Acyl-CoA Species

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When the MEFs reached confluency, cells were treated with drugs and gently harvested. For short-chain acyl-CoA, high-pressure liquid chromatography (HPLC) analysis was performed using the Surveyor LC system (Thermo Fisher, Bremen, Germany) with MS plus pumps and the Micro As auto sampler. Mass spectral analysis was performed on the LTQ-Orbitrap XL mass spectrometer (Thermo Fisher, Bremen, Germany) with an electrospray ionization (ESI) probe operated in positive ion mode. For long-chain acyl-CoA, HPLC analysis was performed using the LC20 UFLC system (SHIMADU, Japan) composed of a column oven and an autosampler. Mass spectral analysis was performed on the Triple Quad™ 5500 LC/MS/MS system (AB Sciex, USA) with a TurboV™ ESI source operated in positive ion mode that was held at 450 °C. More detailed protocols are provided in Additional file 2.
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9

Amino Acid Profiling of Microbial Cultures

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At the end of 72 h of incubation, 5 mL of the culture filtrate was mixed and hydrolyzed with 5 mL of HCl (6 mol/L) in a constant temperature oven at 110 °C for 22 h. Then, concentrations of individual amino acids were determined through liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis using a SCIEX Triple Quad 5500 LC-MS/MS System (AB SCIEX (Pvt.) Ltd., Framingham, MA, USA) as reported previously [14 (link)]. The cation exchange column was used for amino acid analysis. The column temperature was 65 °C, and the elution gradient was 100% A–100% B linear gradient. The detector was Waters 470 fluorescent detector. Finally, the percentage content of each amino acid was calculated according to the peak area of each amino acid in the chromatogram.
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10

Serum CoQ10 Quantification Protocol

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Blood samples were drawn from a vein at the baseline (just before meal ingestion), and 1.5, 3, and 5 h after the start of the meal, and serum was obtained by centrifugation after clot formation. Quantitative analysis of serum CoQ10 concentration was measured by Kaneka Techno Research Co., Ltd., using liquid chromatography with tandem mass spectrometry (LC/MS/MS) [43 , 44 (link)]. In brief, 0.7 mL of the isopropanol was added to 0.1 mL of serum, mixed, and stored at −80°C until just before the analysis. After centrifugation, the supernatant was filtered through a membrane filter. Then, 200 μL aliquots were mixed with 200 μL of methanol and 50 µL of oxidized CoQ9 (50 ng/mL in 2-propanol) as an internal standard and used as the sample for LC/MS/MS, which was performed using an AB Sciex Triple Quad 5500 LC-MS/MS system and a reversed-phase octadecyl-silica column (AB Sciex, Framingham, MA, USA). The intra- and interday coefficients of variation for CoQ10 were less than 2 and 10%, respectively.
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