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39 protocols using lx 112

1

Ultrastructural Analysis of Autophagosome Formation

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To detect the formation of autophagosomes, cardiomyocytes were fixed with 2.5% glutaraldehyde and then in osmium tetroxide. After dehydration in an ethanol gradient, samples were incubated with propylenoid, impregnated with a mixture of propylenoid/LX-112 (1:1, 21210; Ladd Research Industries, Williston, ND, USA), and embedded in LX-112. Ultrathin sections were stained with uranyl acetate and lead citrate. Sections were examined under a Hitachi H-7500 electron microscope.
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Ultrastructural Analysis of Retinal Tissue

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Eyes were enucleated and fixed in 4% PFA in 0.1 M Sorenson’s buffer (PH 7.2) for 3 hours at 4°C. Retinas were dissected from the eye and further fixed with 2.5% gluteraldehyde and then post-fixed with 1% OsO4, both in Sorenson’s buffer, for 1 hour. Tissue was embedded in Lx-112 (Ladd Research Industries, Inc.). 60 nm sections were cut on a PT-XL ultramicrotome and then stained with uranyl acetate and lead citrate. Images were captured using a JEOL JEM-1200 EXII electron microscope with an ORCA-HR digital camera (Hamamatsu).
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3

Ultrastructural Analysis of Pancreatic and Lung Tissues

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The pancreatic and lung tissues were fixed by 2.5% glutaraldehyde and 2% paraformaldehyde in 0.1 M phosphate buffer (pH 7.4) and further fixed in 1% osmium tetroxide in 0.1 M phosphate buffer (pH 7.4) for 1 hour. Samples dehydrated in a graduated ethanol series, and embedded in LX-112 (Ladd Research Industries, Vermont, VA). Thin sections (70nm) were cut by Diatome knife and stained with uranyl acetate and lead citrate. Samples were viewed in a JEOL JEM1400 TEM (JEOL USA Inc., Peabody, MA, USA). Each sample were examined at various magnifications from x 6,000 to 35,000.
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Ultrastructural Analysis of Neurons

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Neurons were postfixed in EM fixative buffer, washed in 0.1 M sodium cacodylate buffer (EMS; Hatfield, PA, USA), and postfixed in 1% osmium tetroxide (EMS) for 1  h at 4  °C [31 (link)]. The fixed cells were washed in 0.1 M sodium cacodylate buffer and dehydrated through a graded ethanol series and embedded in LX-112 (Ladd Research Industries; Williston, VT, USA). The sample blocks were sectioned (thickness, 0.5–1 μm) and cut into 90 nm thick sections with an ultramicrotome (Leica EM UC7; Buffalo Grove, IL, USA). The ultra-thin sections were counterstained with uranyl acetate 2% (EMS) and lead citrate. All images were taken with an 80 kV transmission electron microscope (Hitachi, H-7650, V01.07; Tokyo, Japan).
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Ultrastructural Analysis of Medial Entorhinal Cortex

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Sections were rinsed in 0.1 m cacodylate buffer and postfixed in 1% OsO4 and 1.5% K4Fe(CN) 6 in 0.1 m cacodylate for 15 min. Another rinse in 0.1 m cacodylate buffer ensued before the sections were dehydrated in an ascending concentration of ethanol and embedded in epoxy resin (LX 112, Ladd Research Industries) according to standard protocols. Sections were flat-embedded between two Aclar sheets at 60˚C overnight. Regions of interest along the dorsoventral axis of MEC LII were carefully cut out and glued with epoxy resin onto polymerized epoxy stubs (Fig. 1b). After polymerization, ultrathin sections of MEC LII were cut using a Leica UC6 Ultramicrotome. Thin sections were collected on 200-mesh thin-bar copper grids and contrasted with 4% uranyl acetate and 1% lead citrate. Sections were inspected with a transmission electron microscope (JEOL JEM-1011) and imaged using a digital Morada camera.
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6

Transmission Electron Microscopy of Nanomaterial Uptake

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TEM imaging was performed on D. magna samples after exposure to COOH-PS NPs or NH2-PS NPs. The samples were prefixed with 4% glutaraldehyde in 0.1 M sodium phosphate buffer pH 7.4 for 1 h at 4 °C. After that they were fixed in 1% OsO4 in 0.1 sodium phosphate buffer for 1 h at 4 °C and were subsequently dehydrated using a gradient of ethanol followed by acetone and LX-112 infiltration followed by embedding in LX-112 resin (Ladd Research Industries, Vermont, OH). Ultrathin sections (50–80 nm) were prepared using a Leica EM UC6 microtome and these were further contrasted with uranyl acetate followed by lead citrate, and finally examined using a Hitachi HT 7700 electron microscope (Hitachi High-Technologies). We used the 2kx2k Veleta CCD camera (Olympus) for image acquisition. TEM analysis was also performed on HT-29 cells. Briefly, cells were detached from the transwells after cell culture and prefixed with 4% glutaraldehyde in 0.1 M sodium phosphate buffer pH 7.4 for 1 h at 4 °C. Thereafter, the procedure described for D. magna samples was followed.
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7

Electron Microscopy Tissue Fixation Protocol

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Cells were fixed with 2.5% glutaraldehyde in 0.1 M Sorenson’s buffer (PH 7.2) for at least one hour, then postfixed with 1% OsO4 also in Sorenson’s buffer for one hour. After dehydration cells were embedded in a mixture of Lx-112 (Ladd Research Industries, Inc.) and Embed-812 (EMS, Fortwashington, PA). Thin sections (60 nm) were cut on the MT-Power-Trome XL ultramicrotome. Sections were stained with uranyl acetate and lead citrate and examined under a JEOL JEM-1200 EXII electron microscope. Images were taken on an ORCA-HR digital camera (Hamamatsu) and recorded with the AMT Image Capture Engine.
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8

Transmission Electron Microscopy of Cells and Extracellular Vesicles

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RT-MPs and cells treated with RT-MPs (100 μg/ml) or erastin (2 μM) were observed by TEM. RT-MPs in suspension were stained with 2% phosphotungstic acid solution for 5 min and then deposited on copper mesh; size and morphology were observed by TEM. Cells were washed in 0.1 M PBS and then fixed with 2.5% glutaraldehyde in 0.1 M Sorenson’s buffer overnight at 4°C; cells were then post-fixed with 1% osmium tetroxide in PBS for 1.5 hours. After dehydration through a graded ethanol series, cells were embedded in Lx-112 (Ladd Research Industries) and Embed-812 (EMS) and then cut on an MT-7000 ultramicrotome. Ultrathin sections were stained with 1% uranyl acetate and 0.4% lead citrate, and then morphology was observed by TEM (HT7700-SS/FEI Tecnai G20 TWIN).
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9

Ultrastructural Analysis of Lung Cells

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Analysis of the ultrastructural properties of lung cells was performed as described previously (23 (link)). In brief, lung tissues were fixed by 2.5% glutaraldehyde and 2% paraformaldehyde in 0.1M phosphate buffer (pH 7.4) and further fixed in 1% osmium tetroxide in 0.1M phosphate buffer (pH 7.4) for 1 h. Samples dehydrated and embedded in LX-112 (Ladd Research Industries, Vermont, Va). Thin sections (70 nm) were cut and stained with uranyl acetate and lead citrate. Samples were viewed in a JEOL JEM1400 TEM (JEOL USA Inc., Peabody, Mass). Each sample was examined at various magnifications from 6,000× to 35,000×.
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10

Glomerular Structural Characterization Protocol

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Structural parameters were measured by unbiased random sampling. Biopsy tissue was processed and embedded in epoxy resin (LX112; Ladd Research Industries, Williston, VT). Measurements were made from digital micrographs, and stereological methods were used to account for 2-dimensional sampling of 3-dimensional objects18 (link). Tissue was prepared for light and electron microscopy studies according to standard procedures21 (link)–23 (link). The following glomerular structural parameters were measured on electron microscopy images as described elsewhere21 (link), 22 (link), 24 (link): glomerular basement membrane width25 (link), 26 (link), mesangial fractional volume, (including mesangial cell and mesangial matrix fractional volumes)25 (link), 26 (link), glomerular filtration surface density25 (link), 26 (link), foot process width27 (link), percentage of endothelial fenestrations27 (link), and the glomerular podocyte fractional volume per glomerulus28 (link). Cortical interstitial fractional volume23 (link) and mean glomerular volume29 , 30 (link) were estimated using light microscopy.
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