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23 protocols using ab137332

1

Immunofluorescence Staining of Cellular Markers

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Cells were cultured on coverslips and were fixed with 4% paraformaldehyde for 20–30 min, permeabilized by 0.4% Triton X‐100, and blocked in 1% BSA/1x PBST at room temperature for 1 h. Primary and secondary antibodies were diluted in a ratio of 1:1000 and 1:10,000 with blocking buffer, respectively. The information of primary antibodies used in current study was listed as following: vimentin (ab24525, Abcam), α‐SMA (A2547, Sigma), collagen I (C2456, Sigma), FN1 (ED‐A) (ab6328, Abcam), MMP1 (ab137332, Abcam), MMP2 (GTX104577, GeneTex), MMP8 (GTX61732, GeneTex), MMP9 (ab38898, Abcam), and MMP13 (ab39012, Abcam). For secondary antibodies: anti‐rabbit Dylight 488 (SA5‐10038, Thermo Fisher Scientific, Waltham, MA), anti‐chicken Dylight 550 (SA5‐10071, Thermo Fisher Scientific), anti‐mouse Dylight 633 (35512, Thermo Fisher Scientific), and mouse Dylight 488 (35503, Thermo Fisher Scientific). Samples were immunostained with primary antibody (1:200) at 4°C overnight, and further incubated with secondary antibodies (1:200) conjugated with Dylight at room temperature for 1 h. Nuclei were counterstained with DAPI (1:1000), and the samples were mounted with anti‐fade solution. Fluorescent images were obtained using Leica TCS SP8 confocal microscope and analyzed by ImageJ software to determine the fluorescent intensity.78, 79, 80
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2

Protein Extraction and Western Blot Analysis

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Total protein was dissolved and extracted using RIPA lysis buffer (Beyotime, Shanghai, China) supplemented with protease and phosphatase inhibitors. A nuclear cytoplasmic protein extraction kit (Wanleibio, Shenyang, China) was used to extract nuclear and cytoplasmic fractions according to the manufacturer’s instructions. Total protein was measured using a BCA protein assay kit (Beyotime, Shanghai, China) according to the manufacturer’s instructions, and the concentration was uniform. The samples were separated by SDS–PAGE using the same volume per sample. Next, the proteins were transferred to a PVDF membrane (Millipore, MA, USA). After blocking with 5% skimmed milk, the membrane was incubated at 4 °C overnight with primary antibodies against p-JNK (1:1000, CST, 4668S), JNK (1:1000, CST, 9252S), p-NF-κB (1:1000, CST, USA), NF-κB (1:1000, CST, 8242S), MMP1 (1:1000, Abcam, ab137332), MMP13 (1:1000, Abcam, ab39012), ADAMTS-5 (1:200, Abcam, ab41037), aggrecan (1:800, Abcam, ab3773), β-actin (1:2000, Affinity Biosciences, AF7018), and lamin B (1:1000, Abcam, ab16048). The next day, the membrane was incubated with the corresponding secondary antibody after washing with TBST. Following incubation with ECL (Thermo Scientific, USA), the bands were identified with an imaging system (Bio-Rad, USA).
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3

Histological and Immunohistochemical Analysis of Tissue Samples

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4% Paraformaldehyde solution was used to fix fresh tissue samples, which were then embedded in paraffin. Paraffin sections were cut at a thickness of 2μm for Hematoxylin and eosin (H&E) staining and immunohistochemical (IHC) staining. Evaluation of NIP histological characteristics and determination of basement membrane thickness was performed via H&E staining. The distribution of MMPs and neutrophils was detected by IHC. Briefly, sections were incubated with 1X pH 6.0 antigen retrieval buffer (Abcam, USA) and 3% hydrogen peroxide (Sigma Aldrich, USA) for eliminating endogenous peroxidase. Sections were then blocked in 10% goat serum (Abcam, USA) and incubated overnight in the dark at 4°C with primary antibodies of MMP-1 (1:200, Abcam, ab137332), MMP-7 (1:200, Abcam, ab207229), MMP-9 (1:200, Abcam, ab76003), TIMP-1 (1:200, Abcam, ab211962), TIMP-3 (1:200, Abcam, ab39184), neutrophil elastase (1:1000 clone NP57 Dako, Glostrup, Denmark), HIF-1α (1:200, Abcam, ab179483). Next, all sections were incubated with the Dako EnVision1 System-HRP (Dako) at room temperature for 30 minutes. For color development, Diaminobenzidine was used as a substrate, and all sections were counterstained by hematoxylin.
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4

Western Blot Analysis of MMP and TIMP

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Protein was extracted from fresh NIP tissue using ice-cold RIPA lysis buffer (Abcam) mixture containing protease and phosphatase inhibitor (Sigma Aldrich). After 30 minutes of incubation on ice with shaking, followed by centrifugation at 14,000 rpm, the supernatant containing the protein was aspirated for use in Western blot analysis. Protein concentration was first determined using BCA protein assay (Thermo Fisher, USA); then, 4X laemmli sample buffer was added to the protein samples according to the manufacturer’s instructions, and heated at 95°C for 10 minutes. 30 μg total protein from each sample was subjected to electrophoresis in 10% SDS-PAGE gel and then transferred onto a 0.22μm PVDF membrane (Millipore, USA). After 2 hours non-specific blocking with 5% skimmed milk, primary antibody of MMP-1 (1:2000, Abcam, ab137332), MMP-7 (1:2000, Abcam, ab207229), MMP-9 (1:4000, Abcam, ab76003), TIMP-1 (1:2000, Abcam. Ab109125), TIMP-3 (1:2000, Abcam, ab39184), GAPDH (1:5000, Abcam, ab186930) were added to the membrane and incubated at 4°C overnight. HRP-conjugated anti-rabbit IgG or anti-mouse IgG were then added as secondary antibody at room temperature for 1 hour. After secondary antibody staining, ECL reagent (Bio-Rad, USA) was used to visualize the blots. Densitometry was performed with ImageJ software to quantify the protein amounts of each sample.
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5

Western Blot Analysis of EMT Markers

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The proteins of each group were collected, and the precipitate was separated by lysis, shock, and centrifugation. The precipitate was separated by electrophoresis in 10% SDS-PAGE gel then transferred to PVDF membrane. Following 5% non-fat milk or BSA blocking, the membranes were incubated with related primary antibodies at 4°C overnight. Then, the membranes were incubated with secondary antibodies for 1 h and imaged by ECL chemiluminescence kit (Bio-Rad). The antibodies utilized as follows: MMP1 (1 : 1000; ab137332; Abcam), Vimentin (1 : 2000, #5741, CST), Snail (1 : 1000, #3879, CST), E-cadherin (1 : 2000, #3195, CST), N-cadherin (1 : 1000, #13116, CST), and GAPDH (1 : 2000 dilution, #2118, CST).
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6

Western Blot Analysis of Skin Proteins

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The harvested skin tissues were homogenized in Pro-prep solution (iNtRON Biotechnology; Seoul, Korea), and their lysates were centrifuged at 12,000× g for 30 min. The proteins were separated by SDS-PAGE and transferred onto a polyvinylidene difluoride (PVDF) membrane (Millipore, MA, USA). The membranes were blocked with 5% nonfat milk for 2 h and washed with Tris-Buffered Saline containing 0.05% Tween-20 (TBST) buffer. The membranes were incubated with primary antibodies of Matrix metalloproteinase (MMP)-1 (ab137332, 1:1000, abcam, Cambridge, UK) -2, -9, and TGF-β1 (sc-13595, sc-393859, sc-130348, 1:1000, Santa Cruz, CA, USA), at 4 °C overnight. The blots were incubated with a horseradish peroxidase-conjugated secondary antibody (1:1000, Thermo Scientific, IL, USA) for 1 h. Immunoreactive bands were visualized with the Pierce ECL Western blotting substrate (Thermo Scientific, IL, USA), using ChemiDoc (BioRad Laboratories, CA, USA).
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7

Immunohistochemical Analysis of PCNA and MMP1

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The dewaxed slides were subjected to heat-mediated antigen retrieval with citric acid buffer (pH 6.0) followed by blocking with 5% to 10% goat serum. The slides were incubated overnight at 4°C with primary antibodies to proliferating cell nuclear antigen (PCNA; ab29, 1:10,000; Abcam, Cambridge, MA, USA) or MMP1 (ab137332, 1:250; Abcam), followed by horseradish peroxidase-labeled secondary antibodies (SAB43714; 1:20,000; Bioswamp, Wuhan, China)for 20 minutes at 37°C. The slides were finally stained with diaminobenzidine and observed under a light microscope. The number of positive cells per 100 cells (excluding proliferating cells of the sebaceous gland and hair follicles) was counted. The proliferation index (PI) was calculated as follows: PI = PCNA-positive cell number/total cell number. For MMP1, the positive cell percentage (0, 0%; 1, <25%; 2, 25% to 50%; 3, 51% to 75%; and 4, >75%) and staining intensity (0, no color; 1, light yellow; 2, brown; and 3, tan) were scored and four grades were defined according to the sum of the positive cell percentage and staining intensity: 0–3, negative or weakly positive, and ≥4, positive and strongly positive.
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8

Evaluating UVA-induced Skin Damage

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Dorsal skin tissue samples were collected at various time points following the final UVA irradiation; 1, and 6 h post-irradiation for Nrf2 and its target proteins, respectively; 1 h post-irradiation for oxidative DNA damage; 24 h post-irradiation for MMP-1 and collagen. Tissue sections were washed with PBS for 5 min/time (3 times) and blocked with phosphate-buffered saline (PBS) containing 2% BSA for 30 min. After removing excess blocking buffer, the slides were incubated with Nrf2 Ab (ab31163; Abcam, Cambridge, MA, United States), GST Ab (sc-459; Santa Cruz Biotechnology, Santa Cruz, CA), NQO1 Ab (ab34173; Abcam, Cambridge, MA, United States) (1:50), 8-OHdG [N45.1] Ab (ab48508; Abcam, Cambridge, MA, United States) (1:50), MMP-1 Ab (ab137332; Abcam, Cambridge, MA, United States) (1:50), collagen I (C-18) Ab (sc-8784; Santa Cruz Biotechnology, Santa Cruz, CA) (1:50) for 1 h. The slides were then washed for 5 min/time (3 times) with a PBS solution and incubated for 1 h at room temperature with FITC-conjugated the secondary Ab (green) and with DAPI (blue) to counterstain the nuclei for detection of nuclear Nrf2, the secondary Ab Alexa Fluor 488 goat anti-rabbit (Abcam) for detection of MMP-1 and collagen levels. An inverted fluorescent microscope equipped with a Nikon Intensilight was used for the imaging of IF stainings (20X) which were quantified using ImageJ software.
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9

Chondrocyte Protein Expression Profiling

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Eleven primary antibodies, including anti-OSX, anti-COL1A1, anti-OC, anti-MMP-1, anti-MMP-3, andanti-MMP-13, were purchased from Abcam (Cambridge, UK). After culturing for 48 h, the isolated chondrocytes were lysed in radioimmunoprecipitation assay (RIPA) lysis buffer. The total protein concentration was determined using a bicinchoninic acid (BCA) kit (Pierce, Rockford, IL, USA). Equal amounts of protein were isolated by sodium dodecyl sulfate - polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride membranes (Bio-Rad, Hercules, CA). The membranes were blocked with 5% skim milk in Tris-buffered saline Tween (TBST) for 1 h, and then incubated with primary antibody anti-OSX (1:1,000, ab22552, Abcam), anti-COL1A1 (1:1,000, ab34710, Abcam), anti-OC (1:500, ab93876, Abcam), anti-MMP-1 (1:1,000, ab137332, Abcam), anti-MMP-3 (1:500, ab53015, Abcam), and anti-MMP-13 (1:3,000, ab39012, Abcam) at 4 °C overnight. The membranes were then washed and subjected to goat anti-rabbit immunoglobulin (Ig)G horseradish peroxidase (HRP)-conjugated secondary antibodies. The blots were detected using an enhanced chemiluminescent (ECL) detection kit (Pierce, Rockford, IL, USA). Actin was used as a loading control. The band densities were determined and analyzed with an automatic digital gel image analysis system Bio-Rad CFX-96 (Bio-Rad, CA, USA).
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10

Immunohistochemical Analysis of Mouse Skin

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Mouse dorsal back skin was isolated after the mice were sacrificed, and IHC analyses were performed with slight modifications according to previously reported methods [20 (link), 21 (link)]. Briefly, the tissue was fixed in a 10% formaldehyde solution in PBS for 24 h and then embedded in a paraffin block. Each section was cut into 5 μm thick slices and treated with xylene for deparaffinization. Then, the sections were treated with 3% hydrogen peroxide in a methanol solution to prevent endogenous peroxidase activity, and the epitopes were retrieved. The slides were treated with 10% normal goat serum for 1 h and then incubated overnight at 4°C with antibodies to silent mating type information regulation 2 homolog 1 (SIRT1; ab166821; Abcam, Cambridge, MA), interleukin- (IL-) 1β (ab9722; Abcam), and matrix metalloproteinase- (MMP-) 1 (ab137332; Abcam). Finally, the sections were stained with hematoxylin and eosin (H&E) and Masson's trichrome stain, as previously reported [22 ].
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