Microarray data analysis: DAT files were analyzed by Expression Console (Affymetrix Inc.). The full data set was normalized by using the Robust Multi alignment Algorithm (RMA). The obtained expression values were analyzed by using the Affymetrix Transcription Analysis Console (TAC) software (Applied Biosystem – Thermo scientific-Italy). Further normalization steps included a per chip normalization to 50th percentile and a per gene normalization to median. Results were filtered for fold change >1.5. Statistical analysis was performed using the ANOVA using as p-value cutoff 0.05 and 0.0, respectively. Relative mRNA expression was reported as relative quantitation (RQ) values, calculated as 2-ΔΔCt, where ΔCt is calculated as Cttarget gene - Cthousekeeping genes (PolR2A mRNA expression). Differences between VPG vs CG were considered statistically significant at p < 0.05. We used one-way ANOVA calculated with StatView software (version 5.0.1.0; SAS Institute Inc., Cary, NC, United States). Relative protein abundance of ATG5, ATG12, HSP90, HSP70, Bcl-2, and PSMD13 was calculated with respect to GAPDH protein abundance and analyzed with the ANOVA calculated with StatView software (version 5.0.1.0; SAS Institute Inc., Cary, NC, United States).
Statview software
StatView is a data analysis software package developed by SAS Institute. It provides users with a comprehensive set of statistical analysis tools for managing and interpreting data. The software offers a graphical user interface and a wide range of statistical methods, enabling users to explore, analyze, and visualize data effectively.
Lab products found in correlation
237 protocols using statview software
Analyzing Gene Expression and Protein Abundance
Microarray data analysis: DAT files were analyzed by Expression Console (Affymetrix Inc.). The full data set was normalized by using the Robust Multi alignment Algorithm (RMA). The obtained expression values were analyzed by using the Affymetrix Transcription Analysis Console (TAC) software (Applied Biosystem – Thermo scientific-Italy). Further normalization steps included a per chip normalization to 50th percentile and a per gene normalization to median. Results were filtered for fold change >1.5. Statistical analysis was performed using the ANOVA using as p-value cutoff 0.05 and 0.0, respectively. Relative mRNA expression was reported as relative quantitation (RQ) values, calculated as 2-ΔΔCt, where ΔCt is calculated as Cttarget gene - Cthousekeeping genes (PolR2A mRNA expression). Differences between VPG vs CG were considered statistically significant at p < 0.05. We used one-way ANOVA calculated with StatView software (version 5.0.1.0; SAS Institute Inc., Cary, NC, United States). Relative protein abundance of ATG5, ATG12, HSP90, HSP70, Bcl-2, and PSMD13 was calculated with respect to GAPDH protein abundance and analyzed with the ANOVA calculated with StatView software (version 5.0.1.0; SAS Institute Inc., Cary, NC, United States).
Immunoglobulin Antibody Levels Analysis
Immunoglobulin Antibody Levels Analysis
Survival Analysis of Disease Cohort
Biomarker Analysis of ASD Subgroups
Correlation and regression analysis were computed to study the relationship between the molecules and the identified clinical parameters. Findings with p value <0.05 were considered significant. StatView software (version 5.0.1; SAS Institute, Abacus Concept Inc., Berkeley, CA, USA) was used for data analyses. To discriminate different subgroups of ASD children based on biomarker levels, we performed Principal Component Analysis (PCA) using as correlated variables: sex, BMI, age, and cytokine levels (TNFa, IL6, CCL2, leptin, resistin and PAI 1). After log transformation and auto scaling (e.g., mean-centered and divided by standard deviation of each variable) PCA was performed using MetaboAnalystR 1.0.3 (Xia Lab, McGill University, Montreal, Canada). We checked quality control of samples using PCA that allowed us to label the 85 samples as outlier so it was excluded from downstream analysis.
Nonparametric Statistical Comparisons
Statistical Analysis of Experimental Data
Quantitative Western Blot Analysis
Comprehensive Statistical Analysis of Oncological Outcomes
Statistical Analysis of Experimental Data
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