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72 protocols using inova 500

1

Purification and Characterization of Bioactive Compound

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The active fraction D was purified by HPLC (Waters: controller 600, pump 600, dual λ absorption detector 2487, Linear Recorder); column C18 (250 × 7.8 mm2 UP ODS); mobile phase: linear gradient of methanol–H2O from 0 to 100% for 52 min; flow rate: 1 mL/min, λ detection at 220 nm and at 420 nm. The column temperature was 30 °C. The injection volume was 200 µL. Under these conditions, the retention time was recorded at 17.6 min. This fraction was shown to contain two main peaks, D1 and D2, but only D2 showed both phosphate-solubilizing and anti-microbial activities.
After purification of the active compound present in D2 by HPLC, the latter was subjected to spectroscopic studies. 1H NMR spectroscopy: Varian Unity 500 (500 MHz), Bruker AMX 500 (500 MHz), Varian Inova 500 (500.33 MHz). 13C NMR spectroscopy: Varian Unity 500 (125.8 MHz), Varian Inova 500 (125.8 MHz). Chemical shifts were measured relative to tetramethylsilane as an internal standard. The homonuclear and heteronuclear 1D and 2D NMR spectra were recorded on a Varian Inova 500 instrument. Mass spectrometry was performed with an LCC ion-trap mass spectrometer (INSERM, Purpan, Toulouse). Samples were analyzed by electrospray ionization in both negative and positive ion mode, and the full-scan mass range (m/z) was 100–2000.
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2

Norbornene-modified Hyaluronic Acid Synthesis

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Hyaluronic acid (HA) was modified with norbornene moieties as previously reported.27 (link),46 (link) Sodium hyaluronate (Lifecore, 82 kDa) underwent proton exchange using Dowex 50 W resin to transform into hyaluronic acid tert-butyl ammonium salt (HA-TBA). The reaction mixture was filtered, titrated to pH 7.05, frozen, then lyophilized to dryness. HA-TBA was then reacted with 5-norbornene-2-methylamine and benzotriazole-1-yloxytris-(dimethylamino)phosphonium hexafluoro-phosphate (BOP) in dimethylsulfoxide (DMSO) for 2 h at room temperature, then quenched with cold water. The reaction mixture was dialyzed (molecular weight cut off: 6–8 kDa) for 5 days, filtered, then dialyzed for another 5 days prior to freezing and lyophilization. The degree of modification was 30% as determined by 1H NMR (500 MHz Varian Inova 500, Fig. S1).
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3

Synthesis of Sugar-Based Compounds

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Materials and reagents were obtained from commercial sources without further purification unless otherwise noted. Anhydrous solvents were obtained either commercially or from an alumina column solvent purification system. All reactions were carried out in oven-dried glassware under inert gas unless otherwise noted. Analytical TLC was performed on glass-backed silica gel 60 Å plates (thickness 250 μm) and detected by charring with 5% H2SO4 in EtOH for detection of sugar. Column chromatography was performed using flash-grade silica gel 32–63 μm (230–400 mesh). 1H NMR and 13C NMR spectra were recorded at 500 MHz with chemical shifts in ppm (δ) referenced to TMS or solvent peaks. NMR spectra were obtained on a Varian Inova 500 instrument. Coupling constants (J) are reported in hertz (Hz). Electrospray ionization (ESI) mass spectra were obtained using a Waters LCT Premier XE.
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4

Enantiomeric Synthesis and Purification

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Unless stated otherwise, all reagents and solvents were purchased from commercial suppliers, and all reactions were carried out under anhydrous conditions with argon atmosphere. Yields were calculated by HPLC chromatography or 1H NMR spectroscopy. UV spectra were obtained using a Perkin-Elmer Lambda2 UV/vis spectrometer. NMR data were collected using either a Varian INOVA 500 (1H 500 MHz, 13C 126 MHz) NMR spectrometer with a 3 mm Nalorac MDBG probe or a Varian INOVA 600 (1H 600 MHz, 13C 150 MHz) NMR spectrometer equipped with a 5 mm 1H[13C,15N] triple resonance cold probe with a z-axis gradient, utilizing residual solvent signals for referencing. High-resolution mass spectra (HRMS) were obtained using a Bruker (Billerica, MA) APEXII FTICR mass spectrometer equipped with an actively shielded 9.4 T superconducting magnet (Magnex Scientific Ltd., UK), an external Bruker APOLLO ESI source, and a Synrad 50W CO2 CW laser. Supelco Discover HS (4.6 × 150 mm) and semipreparative (10 × 150 mm) C18 (5 μm) columns were used for analytical and semipreparative HPLC, respectively, as conducted on a Hitachi Elite Lachrom System equipped with a Diode Array L-2455 detector. The enantiomeric excess (ee) was calculated from the area of HPLC peak using a silica-based protein phase enantiomer separation column, RESOLVOSIL BSA-7 column, eluting with 0.1 M phosphate buffer pH 7.5, 2 % 1-propanol.
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5

Synthesis of Norbornene-modified Hyaluronic Acid

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Norbornene-modified HA was synthesized similar to previous methods.33 (link) Briefly, sodium hyaluronate (Lifecore, 74 kDa) was reacted with Dowex 50W proton-exchange resin, filtered, titrated to pH 7.05, frozen, and lyophilized to yield hyaluronic acid tert-butyl ammonium salt (HA-TBA). HA-TBA was then reacted with 5-norbornene-2-methylamine and benzotriazole-1-yloxytris-(dimethylamino)phosphonium hexafluorophosphate (BOP) in dimethylsulfoxide (DMSO) for 2 h at 25 °C. The reaction was quenched with cold water, dialyzed (molecular weight cutoff: 6–8 kDa) for 5 days, filtered, dialyzed for 5 more days, frozen, and lyophilized. The degree of modification was 22% as determined by 1H NMR (500 MHz Varian Inova 500, Figure S1).
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6

Analytical Characterization of Organic Compounds

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Unless stated otherwise, all reagents and solvents were purchased from commercial suppliers. Yields were calculated by HPLC chromatography or 1H NMR spectroscopy. Circular dichroism spectra were obtained on a Jasco J720A spectropolarograph. NMR data were collected using either a Varian INOVA 500 (1H 500 MHz, 13C 126 MHz) NMR spectrometer with a 3 mm Nalorac MDBG probe or a Varian INOVA 600 (1H 600 MHz, 13C 150 MHz) NMR spectrometer equipped with a 5 mm 1H[13C,15N] triple resonance cold probe with a z-axis gradient, utilizing residual solvent signals for referencing. High-resolution mass spectra (HRMS) were obtained using a Bruker (Billerica, MA) APEXII FTICR mass spectrometer equipped with an actively shielded 9.4 T superconducting magnet (Magnex Scientific Ltd., UK), an external Bruker APOLLO ESI source, and a Synrad 50W CO2 CW laser. Supelco Discover HS (4.6 × 150 mm) and semipreparative (10 × 150 mm) C18 (5 μm) columns were used for analytical and semipreparative HPLC, respectively, as conducted on a Hitachi Elite Lachrom System equipped with a Diode Array L-2455 detector.
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7

Fluorescent Dye Conjugation and Characterization

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Alexa Fluor 488 succinimidyl (NHS) ester was purchased from Thermo Fisher Scientific. Other reagents were obtained from commercial sources and used as purchased. Dichloromethane (DCM) was freshly distilled using standard procedures. Other organic solvents were purchased anhydrous and used without further purification. Unless otherwise noted, all reactions were carried out at room temperature (RT) in glassware with magnetic stirring. Organic solutions were concentrated under reduced pressure with bath temperatures <30 °C. Flash column chromatography was carried out on silica gel G60 (Silicycle, 60–200 μm, 60 Å). Thin‐layer chromatography (TLC) was carried out on Silica gel 60 F254 (EMD Chemicals Inc.) with detection by UV absorption (254 nm) where applicable, by spraying with 20 % sulfuric acid in ethanol followed by charring at ∼150 °C or by spraying with a solution of (NH4)6Mo7O24⋅H2O (25 g/L) in 10 % sulfuric acid in ethanol followed by charring at ∼150 °C. 1H NMR spectra were recorded on a Varian Inova 500 (500 MHz) spectrometer equipped with sun workstations or on a Bruker Ultrashield (600 MHz). Mass spectra were recorded on an Applied Biosystems 5800 MALDI‐TOF or Shimadzu LCMS‐IT‐TOF mass spectrometer. The matrix used was 2,5‐dihydroxy‐benzoic acid (DHB).
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8

Structural Analysis of P5S3 by NMR

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The NMR data were all collected at 20 °C on a double-labeled (13C, 15N) sample (~1 mM) of P5S3 using four-channel Varian Inova-500, -600 and -750 spectrometers equipped with triple resonance probes and pulse field gradients. Two-dimensional 1H-15N heteronuclear single quantum coherence (HSQC) spectra were obtained under a variety of buffer conditions similar to those used for the CD studies, however, 2% acetic acid (2% CD3CO2D, 7% D2O, 91% H2O) was chosen for the collection of backbone assignment NMR data because the quality of the data was best under this condition. This data consisted of standard two-dimensional 1H-15N and 1H-13C HSQC experiments and three-dimensional HNCACB, HNCA, CC-TOCSY-NNH, 15N-edited NOESY (90 ms mixing time), and HNN experiments using the Varian Biopack suite of pulse programs. The average backbone amide 15N T1/T ratios, measured with a modified 1H-15N HSQC experiment to record one-dimensional spectra,60 (link),61 (link) was used to estimate an overall rotational correlation time (τc) for P5S3 at 20 °C. Felix2007 (MSI, San Diego, CA) and Sparky (v3.115) were used to process and analyze, respectively, all the NMR data. Indirect methods (DSS = 0 ppm) were used to reference the 1H, 13C, and 15N chemical shifts.62 (link)
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9

Chiral Compound Purification and Analysis

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All reagents were obtained from Sigma-Aldrich. Flash chromatography was performed using silica gel 60 (230–240 mesh). 1H-NMR and 13C-NMR experiments were obtained using a Varian INOVA 500 (1H, 500 MHz and 13C, 125 MHz) spectrometer. Chemical shifts are given in delta (δ, ppm) values and the coupling constants (J) in Hertz (Hz). High-performance liquid chromatography (HPLC) analyses were carried out on a Merck HITACHI LaChrom chromatograph with an UV detector at 254 nm, 210 nm, or 230 nm, using the chiral chromatography columns Daicel Chiralcel OJ, Daicel Chiralcel OD-H, or Chiralpak AD (25 cm × 4.6 mm I.D.).
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10

Synthesis and Characterization of o-AMSA

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All chemicals were purchased from commercial sources as noted below and used as received. NMR spectra were recorded on a Varian Inova 500 (500 MHz for 1H and 125 MHz for 13C) instrument in CD3OD and were recorded at ambient temperatures. Chemical shifts are reported in units of parts per million (ppm). 1H NMR were calibrated using the residual protio-solvent as a standard. 13C NMR spectra are calibrated using the deutero-solvent as a standard. High-resolution mass spectra (HRMS) was obtained on a Bruker micrOTOFQ-II mass spectrometer.
o-AMSA hydrochloride was prepared from 9-chloroacridine (Aldrich) and N-(4-amino-2-methoxyphenyl)methanesulfonamide (ChemBridge) according to a literature procedure41 (link). 1H NMR (500 MHz, CD3OD): δ 8.23 (ddd, J = 8.8, 1.3, 0.6 Hz, 2H), 8.03 – 7.98 (m, 2H), 7.95 (ddd, J = 8.6, 1.3, 0.6 Hz, 2H), 7.55 (d, J = 8.4 Hz, 1H), 7.48 (ddd, J = 8.8, 6.7, 1.3 Hz, 2H), 7.17 (d, J = 2.3 Hz, 1H), 7.02 (dd, J = 8.4, 2.3 Hz, 1H), 3.84 (s, 3H), 3.02 (s, 3H); 13C NMR (126 MHz, CD3OD): δ 157.3, 154.1, 141.8, 139.7, 136.9, 127.6, 126.8, 125.9, 125.4, 120.2, 118.1, 115.2, 109.5, 56.8, 39.9; HRMS (m/z): [M]+ calcd. for [C21H20N3O3S]+, 394.1220; found, 394.1224. see Supplementary Fig. 12 for NMR spectra.
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