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Sea block blocking buffer

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom

Sea Block blocking buffer is a proprietary blocking solution designed for use in various immunoassay and protein-based applications. It effectively blocks non-specific binding, helping to improve signal-to-noise ratio and enhance assay performance.

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34 protocols using sea block blocking buffer

1

SARS-CoV-2 Seroreactivity Measurement Protocol

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MCF test strips were coated in all 10 capillaries
with 40 μg/mL
of SARS-CoV-2 S1 protein produced in-house by incubating for 1 h at
RT. The antigen solution was replaced with PVOH 0.1 mg/mL for 2 h
at RT and then a blocking buffer (Superblock + 10% FBS + 5% GS) and
subsequently stored at 4 °C in the blocking buffer prior to cutting
47 mm long test strips fitted into siphon holders. The seroreactivity
against the ″S1″ antigen was measured using a conventional
endpoint titer protocol, with plasma derived from whole blood volunteer
samples stabilized in 4% sodium citrate (Sigma Aldrich, UK) serially
diluted in the Seablock blocking buffer (ThermoFisher Scientific,
UK). The patient samples were incubated for 10–20 min in the
siphon devices followed by three washes with PBS-T totaling 5 min.
The secondary antibody, anti-human IgG conjugated with alkaline phosphatase
(ThermoFisher Scientific UK) at 1 μg/mL in the Seablock blocking
buffer, was incubated for a total of 10–20 min before being
washed three times with PBS-T allowing a 5 min total wash duration
and then addition of fluorescence substrate.
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2

Quantitative Protein Analysis by Western Blotting

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Following hypoxic or normoxic incubation, cells were
scraped on ice in SDS–urea buffer (6.7 M urea, 10 mM Tris–Cl
(pH 6.8), 10% v/v glycerol, and 1% w/v SDS supplemented with 1 mM
dithiothreitol and Complete Protease Inhibitor mixture (Roche Applied
Science)). Lysates were then sonicated on ice for 10 s three times
with a 10 s pause between cycles and snap-frozen at −80 °C.
Total protein concentration was determined using a Pierce BCA assay
kit (Thermo Scientific). Protein (1 μg total per well) was loaded
on a NuPage 4–12% Bis–Tris gel (Life Technologies) and
then transferred to a 0.45 μm nitrocellulose membrane using
wet transfer at 30 V for 1 h. Membranes were blocked in SEA BLOCK
blocking buffer (Thermo Scientific) overnight then probed with primary
and fluorescent secondary antibodies (see Table S1) diluted in 3% SEABLOCK, PBS, and 0.1% Tween-20. Blots were
imaged on an Odyssey CLx Fluorescent Imaging System (LI-COR) and analyzed
using Image Studio software (LI-COR).
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3

Affinity-based Kinase Binding Assay

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TRK (A, B, C) kinases T7 phage strains were prepared in an E. coli host derived from the BL21 strain. E. coli were grown to log-phase and infected with T7 phage and incubated with shaking at 32 °C until lysis. The lysates were centrifuged and filtered to remove cell debris. Streptavidin-coated magnetic beads were treated with biotinylated small molecule ligands for 30 min at room temperature to generate affinity resins for kinase assays. The liganded beads were blocked with excess biotin and washed with SeaBlock blocking buffer containing 1% BSA, 0.05% Tween 20, 1 mM DTT to remove unbound ligand and to reduce non-specific binding (Thermo Fisher Scientific, Watham, MA). Binding reactions were assembled by combining kinases, liganded affinity beads, and test compounds in 1 × binding buffer (20% SeaBlock, 0.17 × PBS, 0.05% Tween 20, 6 mM DTT). Test compounds were prepared as 111X stocks in 100% DMSO. KDs were determined using an 11-point threefold compound dilution series with three DMSO control points. The TRK kinase binding assays were outsourced to DiscoveRx, Fremont Ca.
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4

Immunofluorescence Staining of Asprosin Protein

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Fixed cells were stained with Rabbit anti-Human, Mouse Asprosin Polyclonal Antibody (MBS7607159, MyBiosource, San Diego, CA, USA). Cells were permeabilized with PBS/0.3%Triton-X (Sigma-Aldrich) for 30 min and blocked for 1 h with SEA BLOCK blocking buffer (37527, Thermo Fisher). Primary asprosin antibody diluted 1:200 in Antibody Diluent (S0809, Agilent Dako) was added to the cells overnight at 4°C. Cells were incubated with secondary Cy™5 AffiniPure Goat Anti-Rabbit IgG (H+L) (AB_2338013, Jackson Immuno Research) for 1 h at room temperature. After that, cells were stained with 1:1000 DAPI for 10 min and embedded in Invitrogen™ Fluoromount-G™ Mounting Medium (Thermo Fisher, 00-4958-02). The negative control was performed the same way without adding a primary antibody. Pictures were taken with the fluorescence and light microscope Olympus BX53 at 100× magnification.
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5

SARS-CoV-2 Neutralizing Antibody Assay

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For the tests of VLP antigenicity, 96-well Nunc Maxisorb plates (Thermo Fisher Scientific) were coated with 0.5 μg of purified VLPs per well diluted in 50 μL of carbonate coating buffer (15 mM Na2CO3, 36 mM NaHCO3, pH 9.6) and incubated overnight at 4 °C. The plates were washed with PBS containing 0.05% Tween-20 (PBST) and blocked with Sea Block blocking buffer (Thermo Fisher Scientific) for 1 h at room temperature. 2-fold serial diluted human sera in blocking buffer were added to the plates and incubated for 1 h at room temperature. After three washes, the bound antibody was detected with goat anti-human Ig (γ chain specific)-HRP conjugated secondary antibody (Thermo Fisher Scientific) diluted 1:10,000 in blocking buffer. The assay reaction was developed with the 1-step Ultra TMB-ELISA substrate (Thermo Fisher Scientific). The reaction was left to develop for 5 min and then stopped with 2 M H2SO4. The optical density was determined at 440 nm using a plate reader. The neutralizing antibody response following immunization was measured using the “cPass™ SARS-CoV-2 Neutralization Antibody Detection Kit” (Genscript, L00847, Piscataway, NJ, USA). Used as directed, the assay detects functional neutralizing antibodies antibodies that prevent the receptor binding domain (RBD) of SARS-CoV-2 binding to ACE-2 expressed as % of blocking activity [18 (link)].
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6

Western Blot Analysis of B Cell Signaling

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Primary human B cells were treated with various concentrations of GML or 0.009% EtOH as a vehicle control in serum free RPMI 1640 media. Cells were then stimulated for 10 min with anti-IgM (Jackson ImmunoReserach 109-006-129) and recombinant IL-4 (BioLegend 574004). Cells were lysed with 2 × sample buffer, heated to 95 °C, and sonicated. Cell lysates were separated across a 4–15% polyacrylamide gel via gel electrophoresis and transferred to PVDF. The membranes were blocked with SEA BLOCK blocking buffer (ThermoFisher) diluted in PBS and incubated overnight at 4 °C with primary antibody. After washing, samples were incubated with secondary antibodies for 30 min at room temperature and then imaged and quantified using a Licor Odyssey. Samples were normalized to GAPDH and analyzed as a fold change with stimulated EtOH control set to 1. Data presented is 3 experimental replicates and analyzed using One-Sample T-test with theoretical value 1.
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7

Western Blot Protein Extraction and Analysis

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Cells were washed in PBS and incubated for 30 min at 4 °C in NaDOC lysis buffer [50 mM Tris·HCl (pH 7.4)/150 mM NaCl/5 mM EDTA/0.5% Triton X-100/0.5% sodium deoxycholate] and a mixture of phosphatase (Thermo-Scientific, Waltham, MA, USA) and protease (Roche, Mannheim, Germany) inhibitors. Extracts were centrifuged at 14,000 xg for 15 min. Protein concentrations in the supernatant were measured by using the bicinchoninic acid method (Pierce, Rockford, IL, USA). Protein extracts (15 μg) were resolved by 4–12% SDS-PAGE (Invitrogen) and transferred to nitrocellulose membranes (iBlot, Invitrogen). Membranes were blocked with SEABLOCK blocking buffer (Thermo-Scientific) for 1 h at room temperature and then incubated overnight at 4 °C with primary antibody. Bound antibody was revealed by infrared detection using a secondary antibody coupled to IRDye fluorophores (Li-Cor biosciences, Lincoln, NE, USA). Western blot read out was performed with the Odyssey Infrared Imaging System (Li-Cor biosciences).
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8

Immunofluorescence Staining of Adipose Tissues

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The preparation of paraffin slides was reported previously.36 (link) The sections of sWAT and BAT were deparaffinized and permeabilized in PBS containing 0.2% of Triton X-100 for 10 minutes. After washing 3 times with PBS, the sections were incubated in sodium citrate buffer at 95°C for 30 minutes for antigen retrieval. Then, the sections were blocked with SEA BLOCK Blocking Buffer (Thermo Fisher Scientific, Cat. #37527) at room temperature for 1 hour and incubated with indicated primary antibodies (1:100 ~ 200 diluted in blocking buffer, refer to the WB analysis section for the antibody information) at 4°C overnight. After 3 time washing with 1 X PBST (PBS containing 0.1% of Tween 20), the sections were incubated with indicated fluorescent signal-conjugated secondary antibodies (1:100 diluted in blocking buffer) at room temperature for 1 hour. Then, the sections were washed with 1 X PBST 3 times and rinsed with double distilled water before mounted with ProLong Diamond Antifade Mountant (Thermo Fisher Scientific, Cat. #P36970) for imaging by confocal microscopy.
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9

Cardiomyocyte Immunohistochemistry and Imaging

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Single cell suspensions of cardiomyocytes were fixed in 4% PFA and permeabilized in PBS with 0.5% Triton X-100. SEA BLOCK blocking buffer (ThermoFisher; 37527) was used for blocking, diluting antibodies, and washes. Cells were incubated with primary antibody overnight at 4°C followed by secondary antibody for 1 hour at room temperature. Cells were then incubated with DAPI, pelleted, resuspended in ProLong Diamond Antifade Mountant (ThermoFisher; P36961) and mounted on slides. Images were acquired with the Nikon Eclipse Ni-E microscope and mononucleated and binucleated cells were counted using Fiji Software. For Histology, tissues were fixed in 4% paraformaldehyde, dehydrated through a series of ethanol washes, and embedded in paraffin. Tissue was sectioned at 6 μm intervals and stained with either hematoxylin and eosin, Masson’s trichrome, or the following antibodies: Sarcomeric α-Actinin (Sigma; A7811), Troponin T-C (Santa Cruz; sc-8121), GFP (Abcam; ab6673).
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10

Western Blot Protein Analysis Protocol

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Cells were washed in PBS and incubated for 15 minutes at 4°C and in NADOC (0.5% Tritonx-100, 0.5% sodium deoxycholate, 50 mM Tris, and 150 mM NaCl) lysis buffer (Thermo Fisher Scientific) with protease (HaltTM Protease Inhibitor Cocktail 100X, Thermo Fisher Scientific) and phosphatase inhibitors (HaltTM Phosphatase Inhibitor Cocktail 100X, Thermo Fisher Scientific). The extracts were centrifuged at 14,000g for 15 minutes. Protein concentrations in the supernatant were measured using a Pierce BCA protein assay kit (Thermo Fisher Scientific) and a Tecan Safire® plate reader. Protein extracts (25 μg) were resolved by 4-12% SDS-PAGE (Invitrogen) and transferred to nitrocellulose membranes (iBlot, Invitrogen). Membranes were blocked with SEABLOCK blocking buffer (Thermo-Scientific) for 1 hour at room temperature and then incubated overnight at 4°C with primary antibodies diluted in blocking buffer. After washing in PBS-Tween buffer, the membranes were incubated with secondary antibodies conjugated to IRDye fluorophores. The infrared signal of the membranes was detected using an Odyssey detection system (Li-Cor biosciences).
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