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5 protocols using fast red substrate kit

1

Alkaline Phosphatase Staining Protocol

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ALP staining was performed using a Fast Red substrate kit (Nichirei Biosciences, Inc., Tokyo, Japan) according to the manufacturer’s protocol. Images of the dish were acquired using LUMIX (Panasonic, Osaka, Japan) and positive areas were detected using ImageJ software (National Institutes of Health, Bethesda, MD).
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2

Pluripotency Marker Detection in Stem Cells

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Alkaline phosphatase staining was performed using a Fast Red substrate kit (Nichirei Biosciences Inc., Tokyo, Japan). To detect pluripotent stem cell marker antigens cells were fixed with PBS containing 4% paraformaldehyde for 10 min at room temperature. After washing with PBS, the cells were treated with PBS containing 5% normal goat serum (Nichirei) and 0.1% Triton X-100 for 45 min at room temperature. Fixed cells were stained with primary antibodies included SSEA-4 (1:100, Stemgent®, Cambridge, MA), TRA-1-60 (1/200, Stemgent®), TRA-1-81 (1/200, Stemgent®), Oct-3/4 (1/200 Millipore), Nanog (1/600, ReproCELL, Yokohama, Japan), Nestin (1/200, Millipore), βIII-tubulin (1/200, Millipore), α-smooth muscle actin (pre-diluted, DAKO Cytomation, Glostrup, Denmark) and α-fetoprotein (1/100, R&D Systems). These primary antibodies were visualized with Alexa Fluor® 488- conjugated goat anti-rabbit IgG, or Alexa Fluor® 594-conjugated goat anti-rabbit IgG, or Alexa Fluor® 488-conjugated goat anti-mouse IgG, or Alexa Fluor® 594-conjugated goat anti-mouse IgG (1/200, Invitrogen, Carlsbad, CA). Nucleuses were stained with DAPI. Fluorescence images were acquired using a Zeiss inverted LSM confocal microscope (Carl Zeiss, GmbH, Germany).
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3

Sendai Virus ALP Staining Protocol

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On day 25 after Sendai virus infection, ALP staining was performed according to the manufacturer’s protocol, using a Fast Red substrate kit (Nichirei Biosciences Inc., Tokyo, Japan). The induction efficiency was calculated as the ratio of the number of ALP-positive colonies to the number of seeded PBMCs.
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4

Immunocytochemistry of Pluripotent Stem Cells

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Cells were fixed with PBS containing 4% paraformaldehyde for 10 min at room temperature and washed with PBS. Continuously, cells were treated with PBS containing 5% normal goat or rabbit serum (Nichirei Biosciences Inc., Tokyo, Japan) and 0.1% Triton X-100 at room temperature. Then cells were fixed and stained with antibodies to Oct4 (1/200 Millipore, Billerica, MA), Tra-1-60 (1/200, Stemgent®, Cambridge, MA), Tra-1-81 (1/200, Stemgent®), SSEA-1 (1/100, Stemgent®), SSEA-4 (1/100, Stemgent®), MAP2 (1/200, Millipore), Nestin (1/200, Millipore), α-smooth muscle actin (α-SMA: pre-diluted, DAKO Cytomation, Glostrup, Denmark), α-fetoprotein (1/100, R&D Systems Minneapolis, MN), and to the SeV nucleocapsid protein (mouse monoclonal antibody, clone #2E4, 1.6 mg/mL). These primary antibodies were visualized with Alexa Fluor® 488-conjugated goat anti-rabbit IgG, or Alexa Fluor® 488-conjugated rabbit anti-mouse IgG, or Alexa Fluor® 488-conjugated goat anti-mouse IgG (1/200, Invitrogen, Carlsbad, CA). Cell nuclei were stained with 4', 6-Diamidine-2'-phenylindole dihydrochloride (DAPI). Fluorescence images were taken using a Zeiss inverted LSM 700 confocal microscope (Carl Zeiss, GmbH, Germany). Alkaline phosphate (ALP) staining was performed using a Fast Red substrate kit (Nichirei) according to manufacturer’s instruction.
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5

Quantifying Alkaline Phosphatase Positivity

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Alkaline phosphate (ALP) staining was performed using a Fast Red substrate kit (Nichirei Biosciences Inc., Tokyo, Japan) according to the manufacturer’s protocol as described previously (Yamasaki et al. 2014 (link)). Images of the dish were taken utilizing LUMIX (Panasonic, Osaka, Japan) and assessed for positive area using ImageJ (Abramoff et al. 2004 ). The reprogramming efficiency was determined as the number of ALP-positive colonies per total number of infected cells.
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