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23 protocols using protamine sulphate

1

Lentiviral Transduction of Exocrine Cells

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In total, 266-6 cells were seeded at a density of 50,000 cells per well of a 6-well plate. Twenty-four hours later, cells were transduced with lentiviral supernatants supplemented with protamine sulphate (10 µg/mL, Sigma-Aldrich) for 48 h. After splitting, cells were selected for at least 1 week in 0.4 µg/mL puromycin (Invitrogen) before any further analysis was performed. Human exocrine cells were transduced with lentiviral shRNA-Evi1 vectors (MOI 10) on the day of isolation for 16 h at a density of 200,000 cells in advanced RPMI supplemented with 5% heat-inactivated FBS, 1% GlutaMax, and 1% Pen/Strep supplemented with protamine sulphate (10 µg/mL, Sigma-Aldrich). Cells were then washed with PBS and further cultured for 4–7 days in Advanced RPMI supplemented with 5% heat-inactivated FBS, 1% GlutaMax, and 1% Pen/Strep.
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2

Quantifying Anti-dsDNA IgG Autoantibodies in Lupus

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For IgG anti-dsDNA ELISAs, 96-well Maxisorp Immuno plates (Nunc) were coated with 500 µg/ml protamine sulphate (Sigma-Aldrich) for 45 minutes at 4°C and afterwards with calf thymus DNA (50 µg/ml) O/N at 4°C. After washing with PBS-T (0.05% Tween 20) the plates were blocked for 1h with 10% calf serum+ 5% goat serum in PBS-T prior to addition of diluted serum (1:2000 for human samples, 1:25 for Blk mouse samples, and 1:200 for B6.Sle1.yaa mouse samples) for 2h. Antibodies were detected using goat anti-mouse IgG-HRP (Southern Biotechnology) or goat anti-human IgG-HRP (Life Technologies), and peroxidase reactions were developed using OptEIA TMB substrate (BD). The reaction was stopped using 1N sulfuric acid and the absorbance at 450 nm was read using a spectrophotometer. In every plate serum from IgG anti-dsDNA+ B6.Sle1.yaa mice or human lupus patient was included as a reference for normalizing purposes. The arbitrary units were calculated as the ratio OD450 (problem serum)/OD450 (reference serum). The concentration of total IgG and IgM in serum of genotyped healthy donors was quantified using “Human IgG ELISA quantitation kit” and “Human IgM ELISA quantitation kit”, respectively (Bethyl Lab).
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3

Lentiviral Transduction of mMSCs

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mMSCs were seeded (6 × 105 cells/flask) and maintained in DMEM supplemented with 10% fetal bovine serum (FBS) and 2 mM L-glutamine at 37 °C with 5% CO2. mMSCs were transduced with recombinant lentivirus (LV-PUUV-S, LV-PUUV-M, and LV-Katushka2S) carrying PUUV N, Gn/Gc, or red fluorescent protein Katushka2S (MOI 100) using Opti-MEM medium (Gibco, Grand Island, New York, USA) supplemented with 8 µg/mL protamine sulphate (Sigma, Saint Louis, USA). Fresh media was added after 24 h to support cell proliferation. The medium and cells were collected 48 h later.
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4

Lentiviral Transduction of Cell Lines

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Cell lines were transduced in 24-well plates by adding concentrated viral supernatant to 2 × 105 cells in 500 μl medium in the presence of protamine sulphate (6 μg ml−1) and spinoculation (1000 × g, 1 h, 32°C). Transduction of murine lin cells isolated from bone marrow cells was done with the same protocol after 24 h prestimulation at a multiplicity of infection of 20–50.
For transduction, 1 × 105 human or murine PSC were seeded as single cells onto Matrigel- (Beckton & Dickinson, Heidelberg, Germany) or gelatine-coated 12-well plates in standard medium containing, respectively. The next day, cells were transduced with lentiviral vectors (MOI 10–50) in the presence of 10 μg ml−1 protamine sulphate (Sigma Aldrich). After 3–4 days cells were transferred to MEF cells and cultured as described above.
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5

Lentiviral Transduction of SOX2 Reporter

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A SOX2 pluripotency response reporter construct containing a SOX2 response element upstream of a minimal CMV promotor driving copGFP and luciferase was purchased from BioCat GmbH, Heidelberg, Germany as pre-packaged lentiviral particles. For lentiviral infection, T47D cells were seeded into six-well plates and incubated with lentiviral particles at a multiplicity of infection (MOI) of 1.5 in the presence of 5 μL/mL protamine sulphate (Sigma-Aldrich, St. Louis, MO, USA). The lentivirus solution was replaced with normal media 24 h later. Cells were cultured for 3 days to await the development of GFP signal at which point they were passaged and selected using puromycin.
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6

Silencing β2-microglobulin in Hepatocytes

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A lentiviral vector system was used to deliver short hairpin RNA (shRNA) to silence β2‐microglobulin (shβ2m) expression. A vector encoding for a non‐sense sequence was used as a control shRNA (shNS). The vector was produced as previously described.8 Briefly, HEK293T cells were cotransfected with psPAX2, pMD2.G and the vector encoding for the shRNA sequence using calcium phosphate (Sigma‐Aldrich, Steinheim, Germany). Lentiviral vector containing supernatants were harvested 48 hours after transfection, filtered and concentrated by ultracentrifugation at 30 000 g (Optima L‐100 XP, Beckmann Coulter, Krefeld, Germany), for 4 hours. The pellets containing the viral vectors were resuspended in Williams's Medium. For hepatocyte transduction, 1.5 × 106 cells were seeded in a 6‐well plate and infected overnight with the vectors in the presence of 8 µg/mL protamine sulphate (Sigma‐Aldrich). Afterwards, hepatocytes were washed and cultured with fresh culture medium.
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7

Podocyte Injury and Growth Factor Responses

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Primary podocytes and a podocyte cell line were obtained and maintained as
previously described (4 (link)). For details, see Online Supporting Information.
Concentration-dependent (10-350ng/ml) and time-dependent (4-72h) studies were
performed with Brain Derived Neurotrophic Factor (BDNF, human recombinant, QED Bioscience
Inc., Histo Line, Milano, Italy) and Neurotrophic Growth Factor (NGF, human recombinant,
Sigma-Aldrich, Milan, Italy), both dissolved in medium. These studies indicated an optimal
working concentration of 200 ng/ml for both growth factors, confirming data previously
obtained in neuronal cells (27 (link)). Results were
evaluated at 8, 20, 24, 48, and 72h.
To induce podocyte damage we used protamine sulphate (100μg/ml, 4h),
puromycin aminonucleoside (10μg/ml, 24h), and adriamycin (doxorubicin
hydrochloride, 0.5μM, 12h) (all from Sigma-Aldrich), dissolved in medium.
Thereafter medium was changed and 200ng/ml BDNF or medium alone were added for 24, 48, and
72h.
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8

Lentiviral Reprogramming Assay Protocol

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Lentiviral particle production was performed as described previously [63] (link). A 4-in-1 reprogramming vector harboring 2A-linked hOct4, hKlf4, hSox2 and hc-Myc and an IRES-linked dTomato (hOKSM.idTomato) was used [26] (link). To determine biological titers, human HT1080 fibroblasts were transduced with viral supernatants and expression of virally delivered fluorescent protein dTOMATO was measured by flow cytometry 4 days post transduction (p.t.). Titers were calculated as follows: [(cell number at transduction) x (frequency of transduced cells) x 2]/(volume of viral supernatant). Viral transductions were performed in presence of 10 mM HEPES and 4 µg/ml protamine sulphate (Sigma) for 8–16 h.
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9

Recombinant Soluble β3-Integrin Production

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Soluble β3-integrin was produced recombinantly in HEK293 as previously described [19] (link). The recombinant sβ3-integrin sequence was designed based on the RNA sequence detected in the AML patients showing increased serum levels of sβ3-integrin. Therefore, the recombinant soluble β3-integrin is expected to have the same effect as the protein found in the AML patient’s serum. Briefly, a lentiviral vector encoding the sequence for sβ3-integrin was used for the HEK293 cells transduction in the presence of 8 µg/mL protamine sulphate (Sigma Aldrich Chemie, Munich, Germany). Seventy-two hours after transduction, cell culture supernatant was analyzed by ELISA for the presence of sβ3-integrin as previously described [19] (link). sβ3-integrin producing HEK 293 cells were cultured in bioreactors (CELLine Adherent, Integra, Fernwald, Germany) to increase the protein production yields. Cell-culture supernatants were harvested and stored at −20°C until the purification step.
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10

Bmi1 Retroviral Overexpression Protocol

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The pMSCV-neo retroviral vector (MSCV) was used to construct the recombinant transfection vector containing the full-length cDNA of human Bmi1, which was cloned from K562 with a confirmed correct sequence. The plasmid was transfected into the PT67 package cell line (Clontech, Mountain View, CA, USA) using a 3:1 ratio of lipofectamin 2000 (Invitrogen) versus DNA. Six hrs after transfection, the transfection reagent was removed and replaced by IMDM (Invitrogen) with 20% FBS (Invitrogen). Cells were re-fed after 24 hrs in complete media plus 1 g/l G418 (Amresco, Solon, OH, USA). Supernatants were pooled and filtered through 0.45 μm syringe filter for immediate use. U937 and K562 were cultured in supernatant containing retroviral particles in presence of 0.6 g/l protamine sulphate (Sigma-Aldrich, St. Louis, MO, USA). Twenty-four hrs after infection, cells were moved to complete media plus 0.5 g/l G418. Subclones of Bmi1-transfected cell were obtained by limited dilution.
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