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9 protocols using anti o glcnac

1

Protein Modification and Regulation Assays

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NButGT, Ac-5SGlcNAc were provided by D. Vocadlo (Simon Fraser University)(48 (link)). SRT1720, EX-527, Compound C purchased from Selleck-Chemicals (Houston, TX). MG132 purchased from Sigma-Aldrich (St. Louis, MO). pcDNA3.1-SIRT1-Flag was gift from E. Verdin (Addgene plasmid#: 13812). pLenti4-HA-OGT (provided by K. Vosseller, Drexel University). Antibodies used: anti-actin, anti-FOXM1 and anti-RL2 from Santa Cruz Biotechnology; pERK1/2, anti-OGT and anti-O-GlcNAc from Sigma-Aldrich; anti-acetylated p53(K382), anti-AMPK, anti-pAMPK(S172), anti-ERK1/2, anti-MMP2, anti-pRaptor(792), anti-Raptor, anti-SIRT1 and anti-Ubiquitin(K48) from Cell Signaling (Danvers, MA); anti-Cdh1 and anti-p53 from Neobiolabs; anti-MMP9 from Novus-Biologicals (Littleton, CO); integrin α5 and α6 are from BD-Pharmingen (San Jose, CA).
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2

Western Blot Analysis of Pax6, O-GlcNAc, and β-actin

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Embryo eyes were separated and lysed in lysis buffer (Beyotime Institute of Biotechnology, Shanghai, China). Proteins (30 μg) were separated by SDS-PAGE and blotted onto nitrocellulose membranes (Amersham Biosciences, Piscataway, NJ, USA). The membranes were individually incubated with anti-Pax6 (1:1000; Developmental Studies Hybridoma Bank, University of Iowa, IA, USA; catalog no. AB 528427), anti-O-GlcNAc (1:2000; Sigma-Aldrich; catalog no. O7764) and anti-β-actin (1:2000; Developmental Studies Hybridoma Bank; catalog no. 224-236-1). Subsequently, the membranes were incubated with goat anti-rabbit or goat anti-mouse IgG secondary antibody (Cell Signaling Technology, Danvers, MA, USA). The immunodetection was done using an enhanced chemiluminescence detection kit (MultiSciences Biotech Co., Ltd, Beijing, China). The band density was quantified using Quantity One analysis software (Bio-Rad).
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3

Protein Modification and Regulation Assays

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NButGT, Ac-5SGlcNAc were provided by D. Vocadlo (Simon Fraser University)(48 (link)). SRT1720, EX-527, Compound C purchased from Selleck-Chemicals (Houston, TX). MG132 purchased from Sigma-Aldrich (St. Louis, MO). pcDNA3.1-SIRT1-Flag was gift from E. Verdin (Addgene plasmid#: 13812). pLenti4-HA-OGT (provided by K. Vosseller, Drexel University). Antibodies used: anti-actin, anti-FOXM1 and anti-RL2 from Santa Cruz Biotechnology; pERK1/2, anti-OGT and anti-O-GlcNAc from Sigma-Aldrich; anti-acetylated p53(K382), anti-AMPK, anti-pAMPK(S172), anti-ERK1/2, anti-MMP2, anti-pRaptor(792), anti-Raptor, anti-SIRT1 and anti-Ubiquitin(K48) from Cell Signaling (Danvers, MA); anti-Cdh1 and anti-p53 from Neobiolabs; anti-MMP9 from Novus-Biologicals (Littleton, CO); integrin α5 and α6 are from BD-Pharmingen (San Jose, CA).
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4

Detecting Protein O-GlcNAcylation and Levels

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For protein extraction, the mycelia of different strains cultured in liquid CM for 48 h were collected, which were ground into powder in liquid nitrogen and resuspended in protein extraction buffer (Biyuntian, Beijing, China). To detect O-GlcNAcylation level, the total protein was immunoprecipitated using anti-Flag beads (Abmart, Shanghai, China), which was then separated on a 10% SDS-PAGE gel and transferred onto a polyvinylidene difluoride (PVDF) membrane (Merck Millipore, Darmstadt, Germany). The PVDF membrane was then incubated with anti-O-GlcNAc as the primary antibody (1:5000, Sigma-Aldrich, St. Louis, MO, USA) and anti-rabbit horseradish peroxidase as the secondary antibody (1:10,000, Abmart, Shanghai, China). To detect protein level of Def1, the total protein was separated on a 10% SDS-PAGE gel and, then, transferred onto a PVDF membrane, which was incubated with anti-Flag as the primary antibody (1:5000, Abmart, Shanghai, China) and anti-rabbit horseradish peroxidase as the secondary antibody (1:10,000, Abmart, Shanghai, China).
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5

Protein Expression Analysis in Stem Cells

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Cells were collected and washed three-times with ice-cold PBS to remove residue media. Then cell pellets were resuspended in cold RIPA lysis buffer (150mM NaCl, 1% NP40, 0.5% DOC, 50mM Tris-HCl at pH 8, 0.1% SDS, 10% glycerol, 5mM EDTA, 20mM NaF and 1mM Na3VO4), supplemented with protease inhibitors. Cell debris was removed by centrifugation at 15000 rpm for 20 minutes at 4°C using benchtop centrifuge. Protein concentration was determined flowing Bradford assay. 50 µg of protein from each sample was separated by SDS-PAGE and transferred to PVDF membrane. Target proteins were detected using indicated specific antibodies: Anti-OGT (Cell-Signaling, cat #20438), Anti-O-GlcNAc (Sigma, cat #MABS1254), Anti-c-MYC (Novus, cat #NB600-335), Anti-Actin (Santa Cruz, cat #sc-47778), Anti-NANOG (Cell-Signaling, cat #3580), Anti-SOX2 (Cell-Signaling, cat #3579), Anti-OCT4 (Cell-Signaling, cat #2750), Anti-KLF8 (Sigma, cat #AV32859).
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6

Regulation of SREBP1 Signaling

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MG132, Nile Red, Methyl-pyruvate were purchased from Sigma-Aldrich (St. Louis, MO, USA). Compound C and Dorsomorphin (2HCL) from Selleck-Chemicals (Houston, TX, USA). Ac-5sGlcNAc was provided by D. Vocadlo (Simon Fraser University). Antibodies used were Anti-OGT, Anti-O-GlcNAc, Anti-FLAG from Sigma-Aldrich; Anti-pSREBP1-(S372), Anti-pAMPK-(T172), Anti-pRaptor-(S792), Anti-pS6 Ribosomal Protein-(S240/244), Anti-p4EBP1-(T70), Anti-AMPK, Anti-Raptor, Anti-S6 Ribosomal Protein, Anti-4EBP1, Anti-FAS, Anti-ACC, Anti-Ubiquitin, Anti-Cleaved Caspase 3, Anti-Cleaved PARP from Cell Signaling (Danvers, MA, USA); Anti-Actin, Anti-Bcl2 from Santa Cruz Biotechnology; Anti-SREBP1, Anti-HIF1α, Anti-c-MYC from Novus Biologicals; Anti-SREBP1, Anti-ACLY, Anti-Glut1 from Abcam; Anti-FBW7 from Bethyl Labs. pLKO.FLAG-SREBP1 (Addgene-32017 from D. Sabatini).
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7

Regulation of SREBP1 Signaling

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MG132, Nile Red, Methyl-pyruvate were purchased from Sigma-Aldrich (St. Louis, MO, USA). Compound C and Dorsomorphin (2HCL) from Selleck-Chemicals (Houston, TX, USA). Ac-5sGlcNAc was provided by D. Vocadlo (Simon Fraser University). Antibodies used were Anti-OGT, Anti-O-GlcNAc, Anti-FLAG from Sigma-Aldrich; Anti-pSREBP1-(S372), Anti-pAMPK-(T172), Anti-pRaptor-(S792), Anti-pS6 Ribosomal Protein-(S240/244), Anti-p4EBP1-(T70), Anti-AMPK, Anti-Raptor, Anti-S6 Ribosomal Protein, Anti-4EBP1, Anti-FAS, Anti-ACC, Anti-Ubiquitin, Anti-Cleaved Caspase 3, Anti-Cleaved PARP from Cell Signaling (Danvers, MA, USA); Anti-Actin, Anti-Bcl2 from Santa Cruz Biotechnology; Anti-SREBP1, Anti-HIF1α, Anti-c-MYC from Novus Biologicals; Anti-SREBP1, Anti-ACLY, Anti-Glut1 from Abcam; Anti-FBW7 from Bethyl Labs. pLKO.FLAG-SREBP1 (Addgene-32017 from D. Sabatini).
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8

Western Blot Analysis of O-GlcNAc Signaling

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HCT116 and HepG2 cell samples were lysed with NP40 assay buffer containing 1× PBS, 1% NP40, 1 mM EDTA, and protease inhibitor cocktail tablets (Roche, Mannheim, Germany). Proteins were separated on 8–15% SDS-PAGE gels and transferred to nitrocellulose membranes (GE Healthcare Life science, Boston, MA, USA). The membranes were blocked with 5% skim milk at room temperature for 1 h and then incubated overnight with primary antibodies at 4 °C. Anti-O-GlcNAc was purchased from Sigma-Aldrich (St Louis, MO, USA). Anti-PARP was purchased from Invitrogen (Waltham, MA, USA). Anti-total caspase-3, cleaved caspase-3, IRE1α, p-p65, p65, p-IKKα/β, IKKα/β, p-IκB and p-eIF2α were purchased from Cell Signaling Technology. Anti-OGT, PERK, Bcl2, Bax, cytochrom c and β-actin were purchased from Santa Cruz. Membranes were washed with TBST and incubated with antimouse or antirabbit horseradish peroxidase (HRP)-conjugated IgG secondary antibody for 30 min. The signal was visualized using an ECL Plus Detection System (GE Healthcare Life Sciences) and the bands were quantified using ImageJ software (NIH, United States).
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9

Protein O-GlcNAc Regulation in Cells

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DMEM (Invitrogen, Carlsbad, CA, USA), fetal bovine serum (Gibco, USA), and anti-eNOS (Cat No. 32027, Cell Signaling Technology, USA), anti-AMPK (Cat No. 9158, Cell Signaling Technology, USA), anti-O-GlcNAc (Cat No. 05-1245, Sigma, USA), anti-O-linked N-acetylglucosamine (GlcNAc) transferase (OGT) (Cat No. ab177941, Abcam, England) anti-protein O-GlcNAcase (OGA) (Cat No. ab124807, Abcam, England), goat anti-mouse IgG (Cat No. SA00001-1, Proteintech, USA), and goat anti-rabbit IgG (Cat No. SA00001-2, Proteintech, USA) antibodies were used. Other reagents are mentioned as they appear in the article.
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