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Q5 hotstart start high fidelity 2x master mix

Manufactured by New England Biolabs

The Q5 Hotstart High-Fidelity 2X Master Mix is a ready-to-use solution for high-fidelity PCR amplification. It contains the Q5 High-Fidelity DNA Polymerase, dNTPs, and optimized buffer components.

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3 protocols using q5 hotstart start high fidelity 2x master mix

1

Cloning and Sequencing Plasmid Protocols

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All plasmids were cloned using Gibson enzymatic assembly (Gibson et al., 2009 (link)). DNA fragments were either amplified from available plasmids or synthesized gBlocks (Integrated DNA Technologies) using Q5 Hotstart Start High-Fidelity 2X Master Mix (New England Biolabs, Cat. #M0494S). The generated plasmids were transformed into Zymo JM109 chemically competent E. coli (Zymo Research, Cat. #T3005), amplified, isolated (Zymo Research, Zyppy plasmid miniprep kit, Cat. #D4036), and Sanger sequenced. Final selected plasmids were maxi-prepped (Zymo Research, ZymoPURE II Plasmid Maxiprep kit, Cat. #D4202) and sequenced thoroughly using Oxford Nanopore Sequencing at Primordium Labs (https://www.primordiumlabs.com). All plasmids and annotated DNA sequence maps are available at https://www.addgene.org/ under accession numbers: 200252 (gRNAdsx, 1067B) 200251 (gRNAix, 1055J), 200253 (gRNAdsx,ix,βTub, 1067L), and 164846 (Nup50-Cas9 or Cas9, 874PA).
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2

Plasmid Generation and Sequencing Workflow

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All plasmids were cloned using Gibson enzymatic assembly44 (link). DNA fragments were either amplified from available plasmids or synthesized gBlocks (Integrated DNA Technologies) using Q5 Hotstart Start High-Fidelity 2X Master Mix (New England Biolabs, Cat. #M0494S). The generated plasmids were transformed into Zymo JM109 chemically competent E. coli (Zymo Research, Cat # T3005), amplified, isolated (Zymo Research, Zyppy plasmid miniprep kit, Cat. #D4036), and Sanger sequenced. Final selected plasmids were maxi-prepped (Zymo Research, ZymoPURE II Plasmid Maxiprep kit, Cat. #D4202) and sequenced thoroughly using Oxford Nanopore Sequencing at Primordium Labs (https://www.primordiumlabs.com). All plasmids and annotated DNA sequence maps are available at www.addgene.com under accession numbers: 200252 (gRNAdsx, 1067B) 200251 (gRNAix, 1055J), 200253 (gRNAdsx,ix,βTub, 1067L) and 164846 (Nup50-Cas9 or Cas9, 874PA).
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3

CRISPR Plasmid Assembly and Sequencing

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All plasmids were cloned using Gibson enzymatic assembly44 (link). DNA fragments were either amplified from available plasmids or synthesized gBlocks™ (Integrated DNA Technologies) using Q5 Hotstart Start High-Fidelity 2X Master Mix (New England Biolabs, Cat. #M0494S). The generated plasmids were transformed into Zymo JM109 chemically competent E. coli (Zymo Research, Cat # T3005), amplified, isolated (Zymo Research, Zyppy plasmid miniprep kit, Cat. #D4036), and Sanger sequenced. Final selected plasmids were maxi-prepped (Zymo Research, ZymoPURE II Plasmid Maxiprep kit, Cat. #D4202) and sequenced thoroughly using Oxford Nanopore Sequencing at Primordium Labs (https://www.primordiumlabs.com). All plasmids and annotated DNA sequence maps are available at www.addgene.com under accession numbers: 200252 (gRNAdsx, 1067B) 200251 (gRNAix, 1055J), 200253 (gRNAdsx,ix,βTub, 1067L) and 164846 (Nup50-Cas9 or Cas9, 874PA).
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