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22 protocols using extracellular matrix gel

1

Transwell Invasion and Migration Assay

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Cell invasive and migrative abilities were determined using transwell chambers coated with or without extracellular matrix gel (BD Biosciences, USA). A total of 1 × 105 cells/well were seeded on the upper inserts with 8-μm pores (BD Biosciences, USA) and were cultured with serum-free media. In the lower chamber, 1 × 105 NFs or CAFs in 500 μl of serum-free media were planted. In the control group, there were only 500 μl of serum-free media without fibroblasts in the lower chamber. Furthermore, various concentrations of AMD3100 were added to the lower wells. After 24 h of incubation, the cells on the upper surface of the filters were removed; the filters were fixed with 4 % paraformaldehyde for 15 min and were stained with crystal violet stain for 30 min (Sigma, USA). The invasive and migrative activity was quantified by counting the number of transpassed cells in five random regions (magnification, ×200) by two independent observers who were blinded to the data. Migration and invasion assays were run in triplicate, and the data were expressed as the average number of cells per random area.
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2

Cell Invasion Assay Protocol

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A total of 1 × 105 transfected cells were suspended in 200 μl serum-free medium and placed in the upper compartment of a transwell chamber (24-well; Corning, NY, USA). The lower chamber was filled with culture medium containing 15% FBS as a chemoattractant and incubated for 72 h. For the invasion assay, the inserts were pre-coated with extracellular matrix gel (BD Biosciences, MD, USA). After incubation, cells on the upper surface of the membrane were removed, and cells on the lower surface were fixed, stained with 0.1% crystal violet, and counted under a light microscope in five randomly picked fields.
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3

Transwell Assays for Assessing Cell Migration and Invasion

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For the transwell migration assay, 1 × 104 iCCA cells were seeded into the upper chamber in serum-free media and incubated at 37°C in a 5% CO2 atmosphere for 24 hours, after which migration toward normal complete media was determined. For the invasion assays, the transwell inserts (24-well inserts with 8-μm pore size, Corning Inc.) were precoated with extracellular matrix gel (BD Biosciences, Bedford, MA). Then, 1 × 104 iCCA cells resuspended in a medium plus 0.1% FBS were seeded into the upper chambers, and the lower chambers were supplied with normal complete media. Then, the cells on the upper surface of the membrane were removed after incubation at 37°C in a 5% CO2 atmosphere for 48 hours, and cells migrating through the membrane were fixed in 4% paraformaldehyde and stained with 0.05% crystal violet solution. Finally, the cells migrating to the lower sides of the filters were counted under a light microscope (LEICA DMi1, Germany).
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4

Evaluating Cell Migration and Invasion

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Wound healing assay was used to evaluate cell migration ability. Serum was withdrawn before analysis to avoid effect of cell proliferation. The migration status was assessed by measuring the movement of cells into the scratched area created by a 10 μl pipette tube, and the spread of wound closure was observed at indicated times, then photographed under a × 10 objective lens.
Cell invasive ability was determined using transwell chambers coated with a extracellular matrix gel (BD Biosciences). 5 × 104 cells/well were placed in the pre-coated upper chamber and cultured with serum-free DMEM. The lower chamber contained 300 μl complete media. After 48 h incubation, the cells on the upper surface of the filter were removed. Then the filters were fixed with 4% paraformaldehyde for 15 min and stained with crystal violet stain for 30 min (Sigma). The invasive activity was quantified by counting the number of trespassed cells per five high-power fields (magnification, × 100) from three independent experiments (mean±S.D.), and a t-test was used to show significant differences between two groups (P<0.05).
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5

Cell Migration and Invasion Assay

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Cells (for migration assays: 2.0×103; for invasion assays: 4.0×103) were cultured with 200 µL serum-free DMEM in the upper compartment of a Transwell chamber (Corning Incorporated, Corning, NY, USA) for 48 hours for the migration assay and 72 hours for the invasion assay. For the invasion assay, the inserts were previously coated with extracellular matrix gel (BD Biosciences, San Jose, CA, USA). The migrated cells were stained with 0.1% crystal violet and counted under a microscope. The related fold changes of cell migration were shown by histogram.
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6

Transwell Assay for MicroRNA-Mediated Cell Migration and Invasion

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We used a Transwell insert (24-well insert, pore size 8 μm; Corning, Inc, Corning, NY, USA) to determine the effect of microRNA miR-320a on K562 migration and invasion in vitro. Briefly, the transfected cells were first starved in serum-free medium overnight, and 3×104 cells were resuspended in serum-free medium and placed in the top chambers in triplicate. The lower chamber was filled with 10% fetal bovine serum as the chemoattractant and incubated for 48 hours for the migration assay and 72 hours for the invasion assay. For the invasion assay, the inserts were previously coated with extracellular matrix gel (BD Biosciences, Bedford, MA, USA). At the end of the experiments, the cells on the upper surface of the membrane were removed, and the cells on the lower surface were fixed and stained with 0.1% crystal violet. Five visual fields of each insert were randomly chosen and counted under a light microscope.
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7

Transwell Cell Migration and Invasion Assay

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A total of 3 × 104 cells were re-suspended in 200 μl of serum-free medium and placed in the upper compartment of a Transwell chamber (Corning; 24-well insert, pore size: 8 μm) with (Invasion assay) or without (Migration assay) extracellular matrix gel (BD Biosciences, San Jose, CA, USA). The lower chamber was filled with 15% fetal bovine serum as a chemoattractant and incubated for 48 h for the migration assay. The cells on the upper surface of the membrane were removed, and the cells on the lower surface were fixed and stained with 0.05% crystal violet. Five visual fields of each insert were randomly chosen and counted under a light microscope.
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8

Transwell-Based Invasion Assay for Cholangiocarcinoma

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We used transwell inserts (24-well inserts, 8 um pore size; Corning Inc. Corning, NY, USA) to detect the invasive capacity of cholangiocarcinoma cells in vitro. The inserts for the invasion assay were pre-coated with extracellular matrix gel (BD Biosciences, Bedford, MA, USA). The transfected TFK-1 or HUCCT-1 cells were cultured with serum-free medium overnight. The following day, transfected cells were re-suspended with medium containing 0.1% bovine serum albumin and transferred to the upper chambers of the transwells. The lower chambers were filled with medium containing 10% FBS. Then the cells were incubated at 37 °C for 48 h. Later, the cells traversed through the membrane and adhered on the lower surface. Then, 0.4% paraformaldehyde and 0.1% crystal violet were used to fix and stain the cells, respectively. Finally, the stained cells were counted under a light microscope. Experiments were performed in triplicate.
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9

Matrigel Invasion Assay Protocol

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Matrigel invasion assay was carried out to assay the cells invasive capacity with a chamber containing a polycarbonate membrane (8 μm pore size) and coated with a layer of extracellular matrix gel (BD Biosciences) according to the manufacturer’s instructions. After 72 h transfection, the number of cells that penetrated the matrigel was counted from six randomly selected fields per membrane.
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10

Transwell Assay to Study Fibronectin's Effect on CRC

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Transwell assays were performed using a 24-well insert (Corning, Inc., Corning, NY, USA) to analyze the effect of fibronectin on CRC cells. After transfection, the cells (1×104 cells/well) were seeded in the top of the chambers in triplicate for 48 h. The lower chambers with 10% fetal bovine serum were co-cultured for another 72 h. For the invasion assay, extracellular matrix gel (BD Biosciences, Bedford, MA, USA) was used. The cells located on the top surface of the membrane were discarded and the cells on the bottom surface were stained with 0.1% crystal violet (Shanghai Sangon). The number of cells on each insert were calculated in five visual fields randomly and calculated using a light microscope (Axioskop; Zeiss).
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