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8 protocols using axiocam icc3 digital camera

1

Morphometric Analysis of Adipocytes in Rats

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Morphometric and immunohistochemical analyses were performed in the four WAT depots from 14-month-old rats. Fragments of tissues were fixed in 4% paraformaldehyde in 0.1M phosphate buffer pH 7.3 overnight at 4°C, and then washed in the same buffer. For paraffin embedding, samples were dehydrated in ethanol, cleared in xylene, and embedded in paraffin blocks at 60°C.
For immunohistochemistry analysis, 5 μm sections were immunostained by means of the avidin-biotin technique using a commercial anti-MAC2 antibody (1:350 in PBS, Cederlane, Hornby, Ontario, Canada), counterstained with hematoxylin and mounted in Eukitt (Kindler, Freiburg, Germany). Images were acquired with a Zeiss Axioskop 2 microscope equipped with AxioCam ICc3 digital camera and AxioVision 40V 4.6.3.0 Software (Carl Zeiss, S.A., Barcelona, Spain). The software was also used to measure the diameter of 100 adipocytes (from one random field) in two non-consecutive hematoxylin/eosin stained sections. Image analysis from all groups was examined in a blind fashion.
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2

Fixing and Staging Meiosis in Rice Anthers

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Fresh young panicles were fixed in ethanol:acetic acid (3:1, v/v) in three rounds of 10 min under vacuum kept on ice (450 mmHg, vaccum pump R-400, Pobel, Madrid, Spain). Subsequently, the fixed panicles were stored at 4°C for up to 3 months.
Ethanol and acetic acid were used as fixatives because they have been previously proved to be successfully employed in proteomic analysis (Ahram et al., 2003 (link); De Souza et al., 2004 (link); Milcheva et al., 2013 (link)) (Figure 1). Although the anther length is generally used as a criterion to determine the developmental stages of anthers in rice (Kerim et al., 2003 (link); Itoh et al., 2005 (link); Nonomura et al., 2011 (link)), an anther from each fixed flower was removed using fine forceps under a dissection microscope (Stemi 2000-C stereomicroscope, Carl Zeiss, Göttingen, Germany) equipped with a cold-light source to stage meiosis as much accurately as possible. Anthers were then stained in acetocarmine solution, squashed on ethanol-cleaned slides and checked under a PrimoStar light microscope (Carl Zeiss, Göttingen, Germany). The identification of the meiotic developmental stage was based on previous cytological descriptions of rice male meiosis (Chen et al., 2005 (link); Itoh et al., 2005 (link)). Photographs were taken using an AxioCam ICc3 digital camera (Carl Zeiss, Göttingen, Germany) attached to the microscope.
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3

Influence of Ascaris ESP on Biofilm Morphology

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The influence of Ascaris ESP on the morphology of biofilms was assessed using the macrocolony biofilm model (Serra and Hengge, 2017 (link)). Experiments were carried out using the same strains as for the crystal violet biofilm formation assay. Cells were grown overnight in salt-free LB medium at 37°C. 5 μL of the overnight culture was spotted on salt-free LB agar plates containing Congo red 40 μg/mL and Coomassie brilliant blue 20 μg/mL. 35 mm petri dishes (Sarstedt, Nümbrecht, Germany) were used to grow one colony per plate. After autoclaving and cooling to 42°C, agar was prepared with controls and treatments at the indicated final concentrations. Colonies were incubated at 28°C for up to 5 days. Macrocolonies were visualized at 10X magnification with a Stemi 2000-C stereomicroscope (Zeiss, Oberkochen, Germany) and photographed with an AxioCamICC3 digital camera (Zeiss).
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4

Simultaneous Ghrelin Receptor and Ion Channel Localization

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Simultaneous detection of Ghrelin receptor and ASIC3 or TRPV1 was performed in retrolabeled NG. 10-μm frontal sections were preincubated for 1 h with 0.1 M PBS (pH 7.4) containing 0.3% Triton X-100, and 5% fetal bovine serum (FBS), then incubated overnight at 4 °C with mouse monoclonal anti-Ghrelin receptor antibody (1:200, SC-374515, Santa Cruz Biotechnology, Germany), and guinea pig polyclonal anti-ASIC3 antibody (1:250, AB5927, Millipore, USA) or rabbit polyclonal anti-TRPV1 antibody (1:200, ACC-030, Alomone Labs, Israel) diluted in the same buffer. After washing, the sections were incubated for 90 min with the secondary antibody conjugated either to Cy-3 or Alexa Fluor 488 (1:500; all secondary antibodies were purchased from Life Technologies). In all conditions, sections were finally coverslipped with mounting medium for fluorescence microscope preparation. Sections were observed with Zeiss Axio Imager Z1 microscope equipped with AxioCam Icc3 digital camera (Carl Zeiss, S.A., Barcelona, Spain). Appropriate positive controls were used to check antibody specificity.
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5

Microscopy and 3D Visualization

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Bright-field images were captured using AxioVision software and an AxioImager M1 microscope equipped with an AxioCam ICc3 digital camera (Carl ZeissMicroscopy, LLC, Germany). Fluorescent images were acquired using AxioImager M1 microscope equipped with an MRm digital camera and AxioVision software, with an LSM700 confocal microscope and a Zen software (Carl Zeiss Microscopy, LLC, Germany). Amira software was used for 3D visualization and analysis.
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6

Immunohistochemical localization of mASAL in transgenic plants

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Immunohistoflourescent localization of mASAL in transgenic plant tissue sections was performed according to the reported method of Yin et al. [44 (link)]. Hand sections of stems, leaves and roots from transformed as well as control plants were incubated in 10 % (v/v) trichloroacetic acid (Sigma, USA) at 4 °C for 1 h followed by ethanol:acetic acid (3:1, v/v) wash with three to four changes for complete removal of chlorophyll from green tissues. The tissue sections were then passed successively through series of graded ethanol to water (90 %, 70 %, 50 %, 30 % (v/v), respectively, each of 15 min duration) and blocked with 3 % (w/v) bovine serum albumin (Merck) in 1x phosphate buffered saline (PBS) at room temperature for 2 h. The tissue samples were incubated with an anti-mASAL antibody (1:10,000) in blocking solution overnight at room temperature. Finally, the sections were washed in 1x PBS followed by incubation with an anti-rabbit IgG-FITC conjugated (1:20,000) (Sigma, USA) secondary antibody for 1 h at room temperature. The slides were examined using an Axioscope Carl Zeiss inverted fluorescent microscope using excitation filter of 450–490 nm for FITC. Images were captured with the AxioCam ICc3 digital camera and the AxioVision imaging software system (Carl Zeiss Micro Imaging, GmbH, Germany).
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7

Microscopic Analysis of Oviposition Sites

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For light microscopy, excised oviposition sites were fixed in formaldehyde, acetic acid and 50% ethanol (FAA, 1:1:18) (Berlyn et al., 1976) and dehydrated in a butanolic series. Dehydrated samples were embedded in paraffin wax (Sigma-Aldrich), sectioned with a rotary microtome (10 μm) and attached to slides using Haupt's adhesive (1 g gelatine, 2 g phenol, 15 ml glycerine, 100 mL H2O). Wax was removed using 100% xylene prior to staining. Sections were dual stained with Safranin O (uniLAB) and Fast Green FCF (uniLAB) before mounting in Entellan (Merck Millipore). The sections were photographed using a Carl Zeiss AG Axiocam ICc3 digital camera (Oberkochen, Germany) coupled to a light microscope (Carl Zeiss AG Axioskop) using Carl Zeiss AG AxioVision SE64 v4.9.0.0 software.
To measure H2O2 accumulation, whole infected and non-infected leaves were submerged in 3,3'-Diaminobenzidine tetrahydrochloride (DAB) Liquid Substrate solution (Sigma-Aldrich) for 4 hours. Leaves were destained by boiling in bleaching solution (ethanol, glacial acetic acid and glycerol, 3:1:1) at 95°C for 40 minutes and stored at 4°C. Leaves were photographed using an Olympus DP21 digital camera (Massachusetts, USA) coupled to a Nikon SMZ1500 dissecting microscope (Nikon Corp., Tokyo, Japan) using Olympus Stream Basic v1.9.4 software.
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8

Liver Morphology Analysis Protocol

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For morphological analysis, liver tissue samples (n 4-5 per group) were fixed by immersion in 4 % paraformaldehyde in 0•1 M-phosphate buffer (pH 7•3) at 48C for 24 h, then washed with 0•1 M-phosphate buffer (pH 7•3), and dehydrated with a graded series of ethanol (50, 75, 96 and 100 %). After dehydration, tissues were cleared in xylene, infiltrated with paraplast embedding media (Sigma-Aldrich Quı ´mica, S.A.) at 608C overnight, and then embedded with fresh paraplast. Sections measuring 5 mm were deparaffinised with xylene, hydrated with decreasing concentrations of ethanol and distilled water, then counterstained with haematoxylin and eosin, and observed with a Zeiss Axioskop 2 microscope equipped with an AxioCam ICc3 digital camera (Carl Zeiss, S.A.). Morphometric analysis was performed in the liver, as described previously (19) . Macrovesicular steatosis was evaluated according to Brunt et al. (27) by analysing the entire histological section (approximate area 2 cm 2 ) of the liver, estimating the percentage of the area covered by fat droplets and using a score graded from 0 to 3 (0, null; 1, when steatosis was detected in up to 30 % of the area; 2, when steatosis was observed in between 30 and 60 % of the area; 3, when steatosis was observed in more than 66 % of the area).
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