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14 protocols using fusion fx5 image analysis system

1

Western Blot Analysis of Proteins

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Proteins were extracted using RIPA buffer (50 mM Tris,1 mM EDTA, 150 mM NaCl, 1% Triton X-100, 0.1% SDS, 0.5% sodium deoxycholate) supplemented with protease inhibitors. Protein concentrations were measured using a BCA Protein Assay Kit (Beyotime, P0010). Protein samples were separated on 8–10% SDS-PAGE and were transferred onto 0.22-μm PVDF membranes (Millipore, ISEQ00010). The membranes were blocked for 1.5 h in Tris-buffered saline containing 0.1% Tween-20 and in 5% (w/v) non-fat milk powder, and then probed with the respective primary antibodies against the target protein overnight at 4 °C. The blots were then washed and incubated for 1 h at room temperature with horseradish peroxidase-conjugated anti-rabbit or anti-mouse secondary antibodies. The membranes were visualized using an ECL reagent (Thermo, Marina, CA, USA) and a Fusion FX5 image analysis system (Vilber Lourmat, Marne-la-Vallée, France).
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2

Western Blot Analysis of α/β-CTF

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Cultured cells were washed with ice-cold PBS followed by RIPA buffer (1% Triton X-100, 0.5% sodium deoxycholate, 0.1% SDS, 150 mM NaCl, 1 mM EDTA, and 50 mM Tris) containing protease inhibitors and phosphatase inhibitors. Protein concentrations were determined using a BCA Protein Assay Kit (P0011, Beyotime, Haimen, China) and Western blotting was performed as previously described.18 (link) For better detection of α/β-CTF, cells were treated with a γ-secretase inhibitor DAPT (250 nM) for 24 h, and proteins were separated on 16.5% Tris-tricine gels.81 (link),82 (link) Membranes were treated using ECL reagent (GE healthcare, UK) and the Fusion FX5 image analysis system (Vilber Lourmat, Marne-la-Vallee, France), visualized and quantified by Quantity One software (Bio-Rad, Hercules, CA) normalized to GAPDH.
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3

Western Blot Analysis of GHRH and GAPDH

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The tissue samples were collected from humans and mice for Western blot analysis using a previously described protocol4 (link),25 (link). Briefly, total proteins were extracted according to the manufacturer’s protocol (Keygen Biotech, Nanjing, China). SDS-PAGE gels (5% stacking gel; 10% separating gel) were used to separate total protein lysates (40 μg per lane) and electrophoretically transferred to polyvinylidene fluoride membranes (PVDF) (Millipore Corporation, USA). PVDF membranes were incubated with 5% nonfat milk for 1 h at room temperature (RT) to prevent non-specific binding. Later, the membranes were incubated with rabbit anti-GHRH (1:500, catalog No: ab187512, Abcam, Cambridge, MA, USA) and anti-GAPDH (1:3,000, Proteintech, Wuhan, China) antibodies overnight at 4 °C. The secondary antibody (peroxidase-conjugated goat anti-rabbit IgG (1:3,000, Proteintech, Wuhan, China) was incubated with the PVDF membranes for 1 h at RT on the next day. Enhanced chemiluminescence (ECL) reagent (Thermo, Marina, CA, USA) and a Fusion FX5 image analysis system (Vilber Lourmat, Marne-la-Vallée, France) were used to visualize the bands. Finally, Quantity One software (Bio-Rad, CA, USA) was used to measure the resulting optical density (OD) values, which were normalized to GAPDH expression.
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4

Western Blot Quantification Protocol

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The cells and tissue samples were lysed in RIPA buffer that included protease inhibitors (Roche, Indianapolis, USA). Protein concentrations were measured using a BCA assay (Dingguo, Beijing, China). Samples were separated on a 12% SDS-PAGE gel, transferred to a PVDF membrane (Millipore, Billerica, MA, USA) and probed with indicated antibodies overnight at 4 °C. The blots were washed and incubated for 1 h with HRP-conjugated anti-rabbit or anti-mouse secondary antibodies. The bands were visualized using an ECL reagent (Thermo, Marina, USA) and a Fusion FX5 image analysis system (Vilber Lourmat, Marne-la-Vallée, France). Relative protein expression levels were calculated using Quantity One software (Bio-Rad) with normalization to the GAPDH signal.
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5

Western Blot Analysis of Protein Expression

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All cells with or without treated with chemicals were lysed in RIPA buffer (50 mM Tris, 1 mM EDTA, 150 mM NaCl, 1% Triton X-100, 0.1% SDS, 0.5% sodium deoxylcholate) including protease inhibitors (Roche, Indianapolis, USA). Protein concentrations were measured using a BCA Protein Assay Kit (Dingguo, Beijing, China). Equal amounts of protein extracts were separated on a 12% SDS-PAGE gel and then transferred onto PVDF membrane (Millipore, Billerica, MA, USA). Membranes were blocked by 5% nonfat dry milk in TBST (25 mM Tris, pH 7.4, 1.5 M NaCl, and 0.05% Tween-20) for 1 h at RT and probed with primary antibodies against furin (Abcam, Cambridge, UK), CEBPβ (Cell Signaling Technology, Danvers, MA, USA), GATA1 (Cell Signaling Technology), and GAPDH (Proteintech, Wuhan, Chian) overnight at 4°C. The blots were washed and incubated for 1 h with HRP-conjugated anti-rabbit or anti-mouse secondary antibodies (Proteintech). The bands were visualized using an ECL reagent (Advansta Inc., Menlo Park, CA, USA) and a Fusion FX5 image analysis system (Vilber Lourmat, Marne-la-Vallée, France). Relative protein expression levels were calculated using the Quantity One software (Bio-Rad) with normalization to the GAPDH signal.
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6

Western Blot Analysis of Miz1 in Mice Brain

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Proteins were extracted from mice cortex and hippocampus using radioimmunoprecipitation assay buffer (P0013E; Beyotime Institute of Biotechnology). Protein concentrations were measured using a bicinchoninic acid protein assay kit (Beyotime Institute of Biotechnology). Equal amounts of protein (50 µg) were separated by 8% SDS-PAGE and electroblotted onto polyvinylidene difluoride membranes (EMD Millipore, Billerica, MA, USA) using an electrophoretic transfer system. The membranes were blocked with 5% non-fat dry milk in Tris buffered saline and Tween-20 (TBST) for 1 h at room temperature, and incubated with primary antibodies against Miz1 and GAPDH overnight at 4°C. The blots were subsequently incubated with HRP-conjugated anti-rabbit and anti-mouse secondary antibodies (both 1:5,000; ProteinTech Group, Inc.) for 1 h at room temperature and washed in TBST 3 times for 5 min each time. The bands were visualized using an enhanced chemiluminescence reagent (Thermo Fisher Scientific, Inc.) and a Fusion FX5 image analysis system (Vilber Lourmat, Marne-la-Vallée, France). Quantity One software 4.6.2 (Bio-Rad Laboratories, Inc., Hercules, CA, USA) was used to measure the resultant optical density values.
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7

Western Blot Analysis of Alzheimer's Proteins

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Brain tissues were homogenized and sonicated in ice‐cold lysis buffer [50 mM Tris–HCl, pH 8.0, 140 mM NaCl; 1.5 mM MgCl2; 0.5% NP‐40 with complete protease inhibitor cocktail (Roche)]. Protein concentration was measured in the supernatant by BCA Protein Assay (Dingguo). The monoclonal or polyclonal antibodies used were BACE1 (Abcam, 1:1000); APP full length (A8717, Sigma, 1:3000); sAPPα (6E10, Covance, 1:1000); sAPPβ (Covance, 1:500); ADAM10 (Abcam, 1:1000); PSEN1 (Proteintech, 1:500); GAPDH (Proteintech, 1:10000); tau46 (CST, 1:1000); phosphorylation‐tau 181 (CST, 1:1000); phosphorylation‐tau 202 (Abcam, 1:5000); and phosphorylation‐tau 396 (Abcam, 1:10000). The secondary antibodies were goat anti‐rabbit or anti‐mouse horseradish peroxidase‐labeled antibodies (Proteintech, 1:5000). The membranes were visualized using an ECL reagent (Thermo) and a Fusion FX5 image analysis system (VilberLourmat). Relative protein intensities were calculated using Quantity One software (Bio‐Rad).
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8

Western Blot Analysis of Brain Proteins

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Total protein from the brains of normal, sham, and stroke animals was extracted as described above. Protein concentrations were measured using a BCA Protein Assay Kit (Dingguo, Beijing, China). A total of 50 µg of protein from each sample was loaded into each lane of SDS-PAGE gels. Gel electrophoresis was performed, followed by transfer of the proteins onto a 0.45-μm polyvinylidene difluoride membrane (Millipore). The membrane was blocked in nonfat milk and probed with the primary and secondary antibodies. The following antibodies were used: rabbit anti-TSLPR (1 : 1000; Millipore), rabbit anti-TSLP (1 : 1000; Abcam), rabbit anti-IL-7R (1 : 1000; Abcam), rabbit anti-STAT5 (1 : 1000; Abcam), rabbit anti-GAPDH (1 : 1000; Proteintech, Chicago, Illinois, USA), and HRP-conjugated goat anti-rabbit IgG (1 : 1000, Proteintech). The blots were washed in TBST and the bands were visualized using ECL reagent (Thermo, New Tork City, New York, USA) and a Fusion FX5 image analysis system (Vilber Lourmat, Collégien, France). Relative protein expression levels were normalized to the GAPDH signal.
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9

Western Blot Analysis of Neuronal Signaling

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Electrophoresis gel, electrophoresis solution, electrophoresis solution, and tris-buffered saline with 0.1% Tween (TBST) were prepared prior. BCA was used to determine protein concentration, and each well was loaded equally. The gels were transferred to a 0.45-µm PVDF membrane (A10178785, GE, USA); 5% nonfat milk in TBST was used to block the membrane for 1 h at room temperature. The membranes were then incubated at 4°C overnight with primary antibodies for 16 h. The primary antibodies were as follows: anti-RGMa (1:10,000, ab169761, Abcam, USA); anti-BMP2 (1:1,000, YT5651, Immunoway, USA); anti-BMPR II (1:500, 220550, ZEN Bio, Chengdu); anti-YAP (1:1,000, 14074, Cell Signaling Technology, USA); anti-ZO-1(1:1,000, 40-2200, ThermoFisher Scientific, USA); anti-GAPDH (1:10,000, 20494-1-AP, Proteintech, Wuhan); and anti-beta Tubulin (1:4,000; 10068-1-AP, Proteintech, Wuhan). Membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies (goat anti-rabbit IgG, SA-00001-2, Proteintech; goat anti-mouse IgG, SA00001-1, Proteintech) for 1 h at room temperature. Images were captured by the Fusion FX5 image analysis system (Vilber Lourmat, F77601 Marne-la-Vallée cedex 3, France).
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10

Developmental Expression of CXCR5 and CXCL13

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We selectively mated 6- to 8-week-old female and male mice (C57BL/6J), isolated [20 (link)] cortical tissue from embryonic and postnatal mice at different developmental time points (E14.5, E17.5, P0, P7, P14, P21, and P60), and extracted total protein samples for Western blotting experiments. Protein samples were separated by 12.5% SDS-polyacrylamide gel electrophoresis, and the gels were separated and electrically transferred to 0.22-μm PVDF membranes. The membranes were blocked with 10% skim milk powder containing tris-buffered saline with 0.1% Tween 20 (TBST) for 1 h at room temperature and then incubated with the noted CXCR5 and CXCL13 antibody/β-tubulin antibody overnight at 4°C. The membranes were washed 3 times with TBST for 10 min each and then incubated in anti-mouse or anti-rabbit secondary antibody containing horseradish peroxidase at room temperature for 1 h. The membranes were then washed three times with TBST and tagged using enhanced chemiluminescence reagents (Thermo Fisher, MA), and a Fusion FX5 image analysis system (Vilber Lourmat, Marne-la-Vallée, France) was used to visualize the bands. Relative protein levels were determined by normalizing the signals for CXCR5 to β-tubulin levels and CXCL13 to β-tubulin and CXCR5, p-Cofilin, Cofilin to actin, and p-Cofilin / Cofilin and F-actin/G-actin using Quantity One software (Bio-Rad, CA).
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