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Ki 67 clone d3b5

Manufactured by Cell Signaling Technology
Sourced in Sweden

KI-67 (clone D3B5) is a monoclonal antibody that recognizes the Ki-67 protein, a nuclear protein associated with cellular proliferation. The Ki-67 protein is expressed during all active phases of the cell cycle (G1, S, G2, and mitosis), but is absent in resting cells (G0 phase). This antibody can be used to assess the proliferative state of cells.

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5 protocols using ki 67 clone d3b5

1

Immunohistochemical Analysis of KI-67 Expression

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Hematoxylin and eosin (H&E) staining and immunohistochemistry were performed using 4 μm thick formalin-fixed, paraffin-embedded tissue sections. Briefly, slides were soaked in xylene, passed through graded alcohols and put in distilled water. Slides were then pre-treated with 1.0-mM EDTA, pH 8.0 or 1.0 mM Citrate (Zymed) in a steam pressure cooker (Decloaking Chamber, BioCare Medical) as per manufacturer’s instructions, followed by washing in distilled water. All subsequent steps were performed at room temperature in a hydrated chamber. Slides were pre-treated with Peroxidase Block (DAKO) for 5 minutes to quench endogenous peroxidase activity, followed by Serum free Protein Block (DAKO) for 20 minutes. Rabbit monoclonal antibody against mouse KI-67 (clone D3B5, Cell Signaling Technology) was applied and slides were incubated overnight at 4 °C. Slides were washed 2X in 50 mM Tris-Cl, pH 7.4 then followed with goat anti-rabbit IgG-HRP (SouthernBiotech), and incubated for 15 minutes. After further washing, immunoperoxidase staining was developed using a DAB chromogen (DAKO) and counterstained with hematoxylin. Images were acquired with the Nikon Eclipse TE2000 and were captured with the Hamamatsu Orca ER digital CCD camera and analyzed with NIS elements 4.13 software. Images were shown as 100X (10X ocular and 10X objective lens) and 400X (10X ocular and 40X objective lens).
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2

Histological Analysis of Neurological Tissues

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Mice were transcardially perfused with PBS containing 5 IU/ml heparin (De Pannemaeker, Ghent, Belgium), followed by perfusion with 4% paraformaldehyde. Brain and spinal cord tissue were dissected, dehydrated, and embedded in paraffin blocks. Alternatively, for vibratome sections brains were stored in low-melting agarose until further processing. Sections of 5 µm were stained with Luxol fast blue (Solvent Blue 38, practical grade; Sigma Genosys) for assessment of demyelination, or incubated with antibodies against CD3 (clone CD3–12; Serotex), Mac-3 (clone CD107b, M3/84; Becton Dickinson Biosciences), B220 (clone RA3-6B2; Becton Dickinson Biosciences), amyloid precursor protein (APP; clone 22C11; Millipore), Iba-1 (Wako Chemicals), or Ki67 (clone D3B5; Cell Signaling). Sections were rehydrated and incubated in antigen retrieval buffer (Dakopatts). Endogenous peroxidase activity was blocked by immersing slides in 3% H2O2. Nonspecific binding was blocked by incubating sections in 5% NGS and 0.1% Triton X-100. Primary antibodies were incubated overnight at 4 °C.
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3

Quantitative Analysis of Ki67 Expression

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Tissues were embedded in Tissue-Tek OCT and frozen. Endogenous peroxidases were quenched from acetone-fixed sections (8 μm) by incubating in 0.3% H2O2 for 10 minutes at room temperature. Following quenching, sections were blocked using 3% goat serum followed by staining with antibodies against Ki-67 (clone D3B5, Cell Signaling Technology). Immunohistochemistry using the ABC Kit (Vector labs) was performed according to the manufacturer’s instructions, and sections were counter stained with hematoxylin. Slides were then imaged at 10X objective magnifications on a Nikon E600 Upright microscope with a Nikon DS-Ri1 Digital camera. Nikon NIS-Elements software was used for image acquisition and image stitching of the entire tumor. Image Pro Plus 7 analysis software was used to measure the percentage of Ki67 stained nuclei within each sample. Percentage of stained nuclei was calculated as total area of brown stained nuclei divided by total area of sample.
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4

Quantitative Immunohistochemistry for Cell Proliferation

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The fixed tumors were processed, paraffin-embedded, and cut into 4 μm on silane-coated slide glass. After hydration, slides were incubated with 10 mM sodium citrate buffer (pH 6.0) at 100°C for 10 min for antigen retrieval. Then, slides were reacted with 3% hydrogen peroxide (Daejung, Siheung, Korea) in DPBS and 5% bovine serum albumin (Sigma-Aldrich) to block non-specific reactions. Tissue slides were incubated overnight with rabbit monoclonal antibodies against proliferating cell nuclear antigen (PCNA; clone PC10; Cell Signaling Technology, Inc.; 1:100) and antigen Kiel 67 (Ki-67; clone D3B5; Cell Signaling Technology, Inc.; 1:100). Slides were incubated with a biotinylated anti-rabbit secondary antibody for 1 h followed by 30 min of further incubation with avidin-biotin peroxidase complex (ABC Elite kit; Vector Labs, Burlingame, CA, USA). Visualization of the peroxidase was performed using a DAB kit (Vector Labs) and counterstained with hematoxylin (Sigma-Aldrich). Images of each slide were acquired by SLIDEVIEW VS200 digital slide scanner system (Olympus) and captured in at least four fields per slide using OlyVia 3.2 software (Olympus). The DAB intensity was semi-quantified using Image J Fiji v. 1.53c software blindly as described previously (Lee et al., 2023 (link)).
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5

Immunofluorescence Analysis of Cell Markers

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For immunofluorescence analysis cells were fixed with CellSave reagent, permeabilized with 0.1% Triton X-100 (Merck, Darmstadt, Germany), and stained for nucleic acid (DAPI; F. Hoffmann-La Roche, Basel, Switzerland), CK (clone C11, Alexa Fluor 488 conjugated, Cat#: GTX11212, GeneTex, Irvine, United States or clones C11/AE1/AE3, TRITC conjugated, Cat#: CKALLRMB000S, Aczon, Monte San Pietro, Italy), CD45 (clone 35-ZS, Alexa Fluor 647 conjugated, Cat#: sc-1178 AF647, Santa Cruz Biotechnology, Dallas, TX, United States), and caspase cleaved cytokeratin (M30 Cytodeath, FITC conjugated, Cat#: 10800, VLVbio, Nacka, Sweden), Ki67 (clone D3B5, Cat#: 9129S, Cell Signaling Technology, Danvers, MA, USA), phosphorylated Akt (clone D9E, Cat#: 4060, Cell Signaling Technology), or phosphorylated mTOR (clone D9C2, Cat#5536, Cell Signaling Technology). For Ki67 analysis a goat anti-rabbit IgG antibody (Cat# A-11012, Thermo Fisher Scientific, Waltham, MA, USA), for phosphorylated Akt and mTOR a donkey anti-rabbit IgG antibody (Cat# A-21206, Thermo Fisher Scientific) was used as the secondary antibody.
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