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5 protocols using hexokinase 2

1

Western Blot Analysis of Protein Levels

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Tissue homogenates/lysates were normalized (90 µg of total protein per lane) and resolved by sodium dodecyl sulfate polyacrylamide gel electrophoresis (NuPAGE; 4–12% Bis Tris-gradient gels, Invitrogen, Carlsbad, CA), transferred to nitrocellulose membranes, and analyzed by immunoblotting [2 (link)] (four rats/group). A total of four gels (labeled Gel 14) were used to resolve all of the samples collected. After transfer, membranes were cut into strips representing desired molecular weight ranges based on a protein standard loaded in the far left lane of each gel [denoted as molecular weight marker (MWM) in kDa], and probed for protein levels by Western blotting. Primary antibodies against cas-pase-1, GAPDH, aldolase-A, and hexokinase II (Santa Cruz Biotechnology, Dallas. TX) were used. Protein transfer was assessed by staining membranes with BLOT Fast Stain (G Biosciences, St. Louis, MO), and total protein levels determined by fluorescence (Odyssey, LI-COR, Lincoln, NE). Total signal from each lane was used to normalize all immunoblot data.
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2

Western Blot Analysis of Heart Proteins

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Whole hearts were homogenized as previously described [Xing et al., 2003 (link)]. Briefly, the frozen hearts were homogenized with a Polytron (Brinkman Instruments) in lysis buffer, lysates were centrifuged at 13,000 × g for 10 min, supernatants were collected, and the protein concentrations were determined by the Bradford assay. The lysates were separated by SDS-PAGE, immunoblotted with primary and secondary antibodies, and immunoblots were developed using ECL reagents (PerkinElmer, USA). The protein bands were scanned by ImageScanner (Amersham Biosciences) and quantitated by densitometry (Fluorchem, 2.0; Alpha Innotech, San Leandro, CA). Antibodies purchased from commercial sources included: p-ACC-Ser79 and AMPK α2 from Upstate; p-AMPK-Thr172, p-Akt-Thr308, p-Akt-Ser473, Phospho (Ser/Thr) Akt substrate (PAS) from Cell Signaling Technology; AS160 from Millipore; Hexokinase II and anti-α-Tubulin from Santa Cruz Biotechnology; and GLUT1 and GLUT4 from Chemicon International. Anti-SNARK and phospho-SNARK-Thr208, and p-AS160-Ser711antibodies were generated by Cell Signaling Technology. Horseradish peroxidase-conjugated anti-rabbit and anti-goat antibodies (Amersham Biosciences) were used to bind and detect all primary antibodies.
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3

Mitochondrial Metabolism Regulation Assay

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N,N,N’,N’-tetramethyl-p-phenylenediamine dihydrochloride (TMPD), β-actin antibody, oligomycin, rotenone, RU486, ascorbate, succinic acid, digitonin, cyanide 3-chlorophenylhydrazone (CCCP), antimycin A and 4-hydroxytamoxifen (4-HOT) were acquired from Sigma (St Louis, MO, USA). Rapamycin was from AG Scientific, Inc (San Diego, CA, USA); (3H) 2-deoxyglucose was acquired from Amersham Pharmacia Biotech (Piscataway, NJ, USA). Phospho-Akt, Phospho-AMPK, total AMPK, Glut-4, hexokinase I, GPX-1, p70S6K (total and phosphorylated form) and α/β tubulin antibodies were from Cell Signaling Technology, Inc (Danvers, MA, USA). Cytochrome c, Akt total, SCO2, Glut-1, hexokinase II antibodies were purchased from Santa Cruz Biotechnology, Inc (Santa Cruz, CA, USA). MitoProfile® Total OXPHOS Human WB Antibody Cocktail was obtained from Mitosciences (Eugene, OR, USA); 7-AAD, MitoSOX™ Red, MitoTracker™ Green and rhodamine-123 were purchased from Invitrogen/Molecular Probes (Carlsbad, CA, USA). p70S6K and MigR1 plasmids were from Addgene (Cambridge, MA, USA) and shRNA P70S6K were from Thermo Scientific/Dharmacon (Lafayette, CO, USA) and were transfected to the cells according to the method provided by the companies.
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4

Immunoprecipitation and Western Blot Analysis

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Cells were lysed using passive lysis buffer (Promega, Madison, WI, USA) followed by gentle sonication. Cell lysates were incubated with suitable antibody in the presence of protein A-Sepharose beads (Amersham, Piscataway, NJ, USA). Immunoprecipitates and cell lysates were boiled with sodium dodecyl sulfate (SDS) sample buffer and then separated by SDS-polyacrylamide gel electrophoresis. The antibodies used in immunoblot and immunoprecipitation were: HIF-1α, α-tubulin, GFP, hemagglutinin (HA), myc epitope, glutathione-S-transferase (GST), VEGF, glucose transporter 3 (GLUT3) and hexokinase II (Santa Cruz Biotechnology, Santa Cruz, CA, USA); and HIF-1α (BD Bioscience, Rockville, MD, USA). A polyclonal anti-PLD antibody that recognizes both PLD1 and PLD2 was generated as previously described.26 (link)
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5

Insulin Signaling Pathway Protein Analysis

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Primary antibodies against Akt2 (#3063), pAkt-Ser473 (#9271), pAkt-Thr308 (#9275), pAMPKα-Thr172 (#2531), pACC-Ser79/212 (#3661), pTBC1D4-Ser588 (mouse: Ser595) (#8730), and pTBC1D4-Thr642 (mouse: Thr649) (#8881) were from Cell Signaling Technology (Danvers, MA, USA) Antibody against pTBC1D1-Ser231 (#NRG-1848963) was from Millipore (Burlington, MA, USA), AMPKα2 antibody (#SC-19131) and Hexokinase II were from Santa Cruz (Dallas, TX, USA)(#SC-6521) while GLUT4 antibody (#PA1-1065) was from Thermo Fisher Scientific (Waltham, MA, USA). ACC protein was detected using horseradish peroxidase-conjugated streptavidin from Dako (Glostrup, Denmark), (#P0397). TBC1D1 and TBC1D4 protein as well as phosphorylation of TBC1D4-Ser711 were detected using antibodies as previously described [31 (link),30 (link)].
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