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18 protocols using heparin

1

LIPG Inhibitor Assay Protocol

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Heparin, Heparinase, orlistat, and entecavir (ETV) were purchased from R&D Systems (Minneapolis, MN). The LIPG inhibitor GSK-264220A was purchased from Tocris Bioscience (Minneapolis, MN). Myrcludex B was purchased from Cosmo Bio (Tokyo, Japan). Primary antibodies to DYKDDDDK (FLAG) (#14793), ACTB (#4970), and GAPDH (#5147) were from Cell Signaling Technology (Danvers, MA); LIPG (ab24447) was from Abcam (Cambridge, UK); GFP (A-11122) was from Thermo Fisher Scientific; HBV core (HBP-023-9) was from Austral Biologicals (San Ramon, CA); and HBV preS1 was from GenScript (Tokyo, Japan). ELISA kit for LIPG (MBS2501814) was purchased from MyBioSource (San Diego, CA).
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2

Neurochemical Modulation of Neuronal Excitability

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The following chemicals were products of R&D Systems: NT, TTX, kynurenic acid, picrotoxin, SR 48692, GDP-β-S, U73122, U73343, heparin, thapsigargin, chelerythrine, bisindolylmaleimide II (Bis II), ML 133, and tertiapin-Q (TQ). Dioctanoyl phosphatidylinositol 4,5-bisphosphate (dic8-PIP2) was purchased from Echelon Biosciences. PD149163 was product of Millipore Sigma. Drugs were initially prepared in stock solution, aliquoted and stored at −20°C. For those chemicals requiring dimethyl sulfoxide (DMSO) as a solvent, the concentration of DMSO was less than 0.1%. This concentration of DMSO either in the recording pipettes or in the bath had no significant effects on NT-elicited facilitation of AP firing (data not shown).
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3

Generation of Kidney Organoids from AIM and PIM

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At day 7, AIM and PIM lineage cells were collected and dissociated into single cell suspension using 0.25% Trypsin-EDTA (Thermo Fisher Scientific). 0.5 × 106 cells were mixed at ratios ranging from 1:3 to 3:1 and spun down at 400 g for 3 min to form a pellet. The pellets were transferred onto a trans-well membrane and incubated with CHIR (5 mM) for 1 hour, then cultured with FGF9 (200 ng/mL), heparin (1 mg/mL), RA (100 nM), GDNF (10 ng/mL, R&D Systems), and EGF (10 ng/mL, Thermo Fisher Scientific) for 5 days. For the next 13 days, the organoids were cultured in basal medium supplemented with aldosterone (10 nM, Sigma-Aldrich), AVP (10 nM, Sigma-Aldrich), and K252a (100 nM, Sigma-Aldrich) changed every other day.
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4

Pharmacological Reagents for Neuronal Research

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The following chemicals were products of R&D Systems: AVP, TTX, kynurenic acid, picrotoxin, 6,7-dinitroquinoxaline-2,3-dione (DNQX), SR49059, GDP-β-S, U73122, U73343, heparin, thapsigargin, chelerythrine, bisindolylmaleimide II (Bis II), ML 133, ML 297, tertiapin-Q and tertiapin-LQ. Dioctanoyl phosphatidylinositol 4,5-bisphosphate (dic8-PIP2) was purchased from Echelon Biosciences. Drugs were initially prepared in stock solution, aliquoted and stored at −20°C. For those chemicals requiring dimethyl sulfoxide (DMSO) as a solvent, the concentration of DMSO was less than 0.1%. This concentration of DMSO either in the recording pipettes or in the bath had no significant effects on neuronal activity.
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5

Isolation and Characterization of Human Kidney Microvascular Endothelial Cells

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Human kidney microvascular endothelial cells (HKMECs) were purified from fetal kidneys after voluntary pregnancy interruptions between 100 and 135 days postconception. Informed consents for the use of fetal tissues were obtained from patients. We then randomly chose 9 different donor HKMECs, thawed and plated half a million cells in T25 flasks coated with 0.2% gelatin and maintained in EBM-2 basal medium containing 1% antibiotic-antimycotic (Life Technologies), 10% FBS, 100 μg/mL ECGS, 50 μg/mL Heparin, and 20 ng/mL VEGF (R&D), for 48 h till confluency. At 48 h, we purified genomic DNA from the HKMECs and cell supernatants were collected. We successfully genotyped cells from 8 donors.
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6

Heparin and Klotho Stimulation of C2C12 Myoblasts

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C2C12 myoblasts were seeded and cultured as outlined above. Cultures were stimulated with 10 μg/ml heparin (Sigma, St. Louis, MO, USA) or heparin and 1 μg/ml Klotho (R&D Systems, Minneapolis, MN, USA) in a growth medium at 24‐ and 48‐h post‐plating. Following 48 h of stimulation, cells were collected in Trizol reagent for RNA isolation.
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7

Neuronal Activity Modulation Protocols

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The following chemicals were products of R&D Systems: [Thr4,Gly7]-oxytocin (TGOT), kynurenic acid, picrotoxin, GDP-β-S, U73122, U73343, heparin, thapsigargin, BAPTA, chelerythrine, bisindolylmaleimide II (Bis II), phorbol 12-myristate 13-acetate (PMA), tetrodotoxin (TTX), ML 133, ML 297, tertiapin-Q and tertiapin-LQ. Drugs were initially prepared in stock solution, aliquoted and stored at −20°C. For those chemicals which are only soluble in dimethyl sulfoxide (DMSO), the concentration of DMSO was less than 0.1%. This concentration of DMSO either in the recording pipettes or in the bath had no significant effects on neuronal activity.
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8

Pharmacological Toolbox for Neuronal Studies

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[Arg8]-vasopressin (AVP) was purchased from Bachem. The following chemicals were products of R&D Systems: TTX, kynurenic acid, picrotoxin, SR49059, GDP-β-S, U73122, U73343, heparin, thapsigargin, BAPTA, chelerythrine, bisindolylmaleimide II (Bis II), capsazepine, M084, edelfosine and pyrazolo[1,5-a]pyrimidin-7(4H)-on (QO-58). Dioctanoyl phosphatidylinositol 4,5-bisphosphate (diC8-PIP2) was purchased from Echelon Biosciences. Drugs were initially prepared in stock solution, aliquoted and stored at −20°C. For those chemicals requiring dimethyl sulfoxide (DMSO) as a solvent, the concentration of DMSO was less than 0.1%. This concentration of DMSO either in the recording pipettes or in the bath had no significant effects on neuronal activity.
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9

Generation of Kidney Organoids from AIM and PIM

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At day 7, AIM and PIM lineage cells were collected and dissociated into single cell suspension using 0.25% Trypsin-EDTA (Thermo Fisher Scientific). 0.5 × 106 cells were mixed at ratios ranging from 1:3 to 3:1 and spun down at 400 g for 3 min to form a pellet. The pellets were transferred onto a trans-well membrane and incubated with CHIR (5 mM) for 1 hour, then cultured with FGF9 (200 ng/mL), heparin (1 mg/mL), RA (100 nM), GDNF (10 ng/mL, R&D Systems), and EGF (10 ng/mL, Thermo Fisher Scientific) for 5 days. For the next 13 days, the organoids were cultured in basal medium supplemented with aldosterone (10 nM, Sigma-Aldrich), AVP (10 nM, Sigma-Aldrich), and K252a (100 nM, Sigma-Aldrich) changed every other day.
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10

Integrin-Mediated Cell Adhesion Assay

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96-well plates (Nunc) were coated with human sCD40L (Biozol, Germany) or human fibrinogen, ICAM-1, heparin, RAGE, vitronectin, JAM-C, or NIF (10 μg/ml, all from R&D Systems, USA) and incubated with CHO cells expressing constitutively activated, human Mac-1 (Mac-1 del) or CHO cells expressing the naïve, non-activated Mac-1 (Mac-1 WT)43 (link). As controls, CHO cells expressing no integrin (CHO) were used. Cells were pre-incubated with blocking antibodies (10 μg/ml) for 15 min and allowed to adhere for 50 min. Adhering cells were counted after repeated washing with PBS. Alternatively, we tested the adhesion of primary mouse peritoneal macrophages to mouse CD40L (R&D Systems, USA). For dynamic adhesion assays, mouse endothelial cell cultures (HUVECs) were grown to confluency in 35 mm cell culture dishes as previously described41 (link), stimulated with TNFα overnight, and placed in a parallel flow chamber system (Glycotech). The number of adhering cells was quantified at the indicated shear rate in the presence of the indicated antibodies (10 μg/ml).
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