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Agilent 6495 qqq

Manufactured by Agilent Technologies
Sourced in United States

The Agilent 6495 QQQ is a triple quadrupole mass spectrometer designed for analytical applications. It provides accurate and sensitive detection of target compounds in complex samples.

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3 protocols using agilent 6495 qqq

1

Metabolome Analysis by Mass Spectrometry

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Metabolome analysis was performed using mass-spectrometry at the Metabolomics Core, Baylor College of Medicine. Metabolites were extracted from cell pellets using previously described standard procedures for targeted metabolomic profiling using ultra high-performance liquid chromatography/tandem-mass spectrometry44 (link)–47 (link). The extracted samples were analyzed using high performance liquid chromatography (HPLC) coupled to Agilent 6495 QQQ mass spectrometry. The data was normalized with respect to the internal standards on a per-sample basis then log2-transformed. Metabolome data was then analyzed using the two-way ANOVA test, with significance achieved at FDR-corrected p-value < 0.05, using the R statistical system. Heatmaps of significant microbiota associated with independent factors or with factor interaction were generated using the R statistical system. Enriched pathway analysis was performed on metabolites identified to show significant differences due to each differing clinical condition using the MetaboAnalyst server37 (link).
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2

Serum Metabolite Extraction and LC-MS Analysis

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400 μL MeOH and 400 μL ACN were added to 100 μL serum. Incubated for 1 h at −20 °C, centrifuged for 15 min at 13,000 rpm and 4 °C. Took the supernatant and evaporated to dryness at 4 °C. Reconstituted with 100 μL ACN/H2O (volume/volume, 1:1), vortexed for 30 s, sonicated for 10 min (4 °C water bath). Centrifuged for 15 min at 13,000 rpm and 4 °C. Supernatants were analyzed by LC-MS. The LC–MS analysis was performed using an UHPLC system (1,290 series, Agilent Technologies) coupled to a triple quadrupole mass spectrometer (Agilent 6,495 QqQ, Agilent Technologies). Chromatographic separation was performed on the Merck ZIC-pHILIC column (100 × 2.1 mm, 5 μm). The column was maintained at room temperature, and the flow rate was 0.2 ml/min. Mobile phase A was 100% H2O, 25 mM CH3COONH4, and 25 mM NH4OH, and mobile phase B was 100% acetonitrile. The column was eluted with a linear gradient system (B %): 0 min, 80%; 1 min, 80%; 3 min, 65%; 7 min, 50%; 7.1, 20%; 9.5 min, 20%; 9.6 min, 80%; 13 min, 80%. Optimized MRM transition 123.1/53.1 in positive mode was utilized for quantifying NAM.
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3

Lipidomic Analysis Using UHPLC-MS

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All lipid species were analyzed at the brutto (sum composition) or medio (fatty acyl chain) level of identification [29 ].
For analysis of bile acids, sterols, steroids, fatty acids, carnitines, and sphingolipids, an Agilent 1290 UHPLC system coupled to an Agilent 6495 QQQ (Agilent, Santa Clara, CA, USA) or a Sciex 4000 QTRAP (Sciex, Framingham, MA, USA) mass spectrometer equipped with an electrospray ion (ESI) source was used. The MS instruments were operated in multiple-reaction monitoring (MRM) with negative-ion (-) detection for analysis of fatty acids and bile acids, and with positive-ion (+) detection for analysis of carnitines, sphingolipids, sterols and steroids.
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