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8 protocols using er id red assay kit

1

IL-1α Protein Immunolocalization Protocol

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The distribution of IL- protein was assessed according to previously published protocols [31 (link)]. The cells were washed in PBS, fixed in 4% paraformaldehyde, permeabilized with 0.1% Triton X-100, incubated with 5% BSA, and then incubated with primary anti-IL-1α polyclonal antibody (1 : 50) at 4°C overnight. After overnight incubation, the cells were washed in PBS twice and incubated with secondary Alexa Fluor 488-conjugated donkey anti-rabbit IgG antibody for 2 hours (BioLegend, San Diego, CA, USA). After immunostaining, the cells were counterstained with the endoplasmic reticulum ER-ID® Red assay kit (Enzo Life Sciences, Farmingdale, NY, USA). Fluorescence was visualized using a Leica DMi8 fluorescence microscope at 40x magnification equipped with filters (A for Hoechst, GFP-EN for Alexa Fluor 488, and N21 for ER Texas Red) and analyzed by LAS EZ software.
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Visualizing ER in ERHT cells

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ERHT cells were seeded at approximately 40% confluency on cover slips pre-coated with Cell-Tak (BD). The next day, cells were fixed and stained for endoplasmic reticulum with the ER-ID Red assay kit (Enzo Life Sciences) using the provided protocol. Cells were then mounted on Superfrost Plus microscope slides (Thermo Scientific) with Vectashield mounting medium (Vector Laboratories). Images were acquired using a Zeiss LSM 510 confocal microscope (Zeiss). Manders’ colocalization coefficients were calculated using ImageJ software.
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3

ER Fluorescent Staining Protocol

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The Endoplasmic Reticulum (ER) staining was performed by using the ER-ID Red assay kit (Enzo life sciences). Cells were plated and cultured to 50-60% confluency on cover slips in six well culture plates. At the end of GSE treatment, the cells were fixed with 3.7% buffered formalin. The fixed cells were permealized with 0.3% Triton-X 100 and exposed to ER-ID Red dye (1: 100 dilution in PBS) for 20 min at 37° C. They were then counterstained with DAPI in the mounting medium, cell images with red stained ER were captured at 60X × 2.3 magnification on a Nikon D Eclipse C1 confocal microscope.
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4

ER-ID Red Assay for Quantifying NCTD

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After respective treatment cells were seeded on 8 well Lab-Tek Chambered coverglass (Thermo, Rochester, NY) and fixed with 4% paraformaldehyde, permeabilized with 0.1% Triton X100, stained with Hoechst 33342 reagent. The ER-ID Red Assay Kit (Enzo Life Sciences, Lörrach, Germany) was used for staining of the ER according to the manufacturer's instructions. Samples were mounted and photographed under an immunofluorescence microscopy. Quantify the fluorescence density of NCTD treated cells with ER-ID Red Assay Kit by FACSCalibur flow cytometer and the data were analyzed by Cell Quest software (BD Bioscience, Bedford, MA).
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5

Endoplasmic Reticulum Stress Assessment

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Endoplasmic reticulum (ER)-specific fluorescence intensity, indicating ER expansion, a hallmark of activated ER stress, was measured using the ER-ID Red assay kit (Enzo Life Science, Farmingdale, NY, USA). Cells were seeded in a 60 mm or 96-well plate culture dish. After a 24 h incubation, DWP05195 was diluted with the culture medium and added to the cells. Following another 24 h incubation, 100 µL 1X Assay Buffer with 1 µL of ER-ID Red Detection Reagent and 1 µL of Hoechst 33342 Nuclear Stain was added into each wells or dishes, and the cells were incubated for 30 min at 37 °C. The fluorescent intensity was analyzed by flow cytometry and cells were imaged using a confocal fluorescence microscope.
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6

Visualizing ER in ERHT cells

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ERHT cells were seeded at approximately 40% confluency on cover slips pre-coated with Cell-Tak (BD). The next day, cells were fixed and stained for endoplasmic reticulum with the ER-ID Red assay kit (Enzo Life Sciences) using the provided protocol. Cells were then mounted on Superfrost Plus microscope slides (Thermo Scientific) with Vectashield mounting medium (Vector Laboratories). Images were acquired using a Zeiss LSM 510 confocal microscope (Zeiss). Manders’ colocalization coefficients were calculated using ImageJ software.
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7

Immunofluorescence Analysis of ER Markers

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The primary antibodies used were β‐actin [anti‐β‐actin mouse mAb (8H10D10, #3700; Cell Signaling Technology, Danvers, Massachusetts)], anti‐BiP (rabbit Ab, 3177; Cell Signaling Technology), anti‐P4hb (rabbit Ab, ab137110; Abcam, Cambridge, UK), anti‐Calr (rabbit Ab, 2891; Cell Signaling Technology), anti‐GRP94 (rabbit Ab, 2104S; Cell Signaling Technology), anti‐GM130 (mouse Ab, 610 822; BD Biosciences, Franklin Lakes, New Jersey) and KDEL mouse antibody (2D6, MA5‐27581; Invitrogen, Carlsbad, California). The secondary antibodies used were goat anti‐rabbit IgG H&L Alexa Fluor 488 conjugated (ab150081; Abcam), goat anti‐mouse IgG H&L Alexa Fluor 647‐conjugated (ab150119; Abcam), HRP‐conjugated rabbit anti‐mouse IgG H&L (ab6728; Abcam) and goat anti‐rabbit IgG H&L (HRP) (ab6721; Abcam). The ER was stained using the ER‐ID Red assay kit, in accordance with the protocol of the manufacturer (Enzo Life Sciences, Farmingdale, New York).
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8

Visualizing Endoplasmic Reticulum Stress in Cardiomyocytes

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Staining of SR in HiPSC-CMs exposed to H/R was performed using ER-ID® Red assay kit (GFP-CERTIFIED®) (Enzo Life Sciences, cat # ENZ-51026-K500). The experiment was performed as per the manufacturer’s instructions. In brief, live cells in 4 well chamber slides were stained using 1× staining solution containing 1 µl of ER-ID Red Detection Reagent in 1 ml of 1× assay buffer provided in the assay kit for 30 min at 37 °C protected from light. Cells were washed twice with PBS, followed by fixation with 3.7% PFA, and mounted with DAPI mounting solution. Images were captured using a Leica SP8 confocal microscope at 63× magnification objective. The fluorescence signal for ER-ID® Red was detected at ex. 561 nm and emission at 590 nm. Laser intensity for the 561 nm line was maintained at 7%. DAPI line 405 nm was used at 40% for clear nuclei identification and counting purposes. Image acquisition settings were kept constant for the complete experiment. Fluorescence intensity quantification for ER-ID® Red and nuclei count was performed using NIH ImageJ software.
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