The largest database of trusted experimental protocols

19 protocols using df6701

1

Dioscin Protects Against Doxorubicin-Induced Cardiotoxicity

Check if the same lab product or an alternative is used in the 5 most similar protocols
H9c2 cells (1 × 105 cells/mL) were seeded into confocal laser dishes. Following dioscin (200 nM) pretreatment for 24 h and DOX (4 μM) intervention for 24 h, H9c2 cells were fixed with fresh 4% paraformaldehyde for 20 min at room temperature. Cells were then permeabilized with 0.2% Triton X-100 for 15 min and blocked with 5% goat serum for 30 min. Antibodies against Nrf2 (A21176, ABclonal), NOX4 (DF6924, Affinity), and GPX4 (DF6701, Affinity) (antibody dilution ratio 1: 200) were incubated overnight at 4 °C, respectively. The cells were then incubated with the DyLight 488 Conjugated AffiniPure Goat Anti-rabbit IgG (H+L) (1:200, BA1227, Boster) at room temperature for one hour. Similarly, cardiac tissue sections were permeabilized with a blocking solution containing 0.2% Triton X-100 and 5% goat serum for 30 min. Then, cardiac tissue sections were treated overnight with Nrf2 (A21176, ABclonal), NOX4 (DF6924, Affinity), and GPX4 (DF6701, Affinity) antibodies (antibody dilution ratio 1: 100), respectively, followed by incubation with DyLight 550 Conjugated AffiniPure Goat Anti-rabbit IgG (H+L) (1:200, BA1135, Boster). Fluorescence changes were captured using confocal laser microscopy and quantified using ImageJ software version 2.0.
+ Open protocol
+ Expand
2

Immunofluorescence Analysis of GPX4 and SLC7A11

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin-embedded renal tissue samples were sliced into 5-μm-thick sections, which were deparaffinized and rehydrated in a graded ethanol series. Antigen retrieval was achieved by boiling sections in antigen recovery buffer (10 min), followed by incubation in goat serum (15 min). Sections were then incubated with primary antibodies against GPX4 (1:200, DF6701, Affinity, China) and SLC7A11 (1:200, NB300-317SS, NOVUS, USA) (4 °C, overnight), rinsed three times, and immersed in Cy3-conjuated goat anti-rabbit IgG (1:200, A0516, Beyotime, China) (60 min, room temperature, in darkness). Cell nuclei were stained with DAPI (D106471-5 mg, Aladdin, China) and images captured using a fluorescence microscope (magnification, 400×).
+ Open protocol
+ Expand
3

Western Blot Analysis of Antioxidant Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
We performed Western blot, as previously recorded ((Zhang et al., 2016 (link); Fei et al., 2020 (link))). The proteins extracted from renal tissues or cells were lysed in a RIPA buffer containing protease and phosphatase inhibitors, and the protein content was detected by using the BCA protein assay kit (Beyotime). Protein samples (50 ug) from each group were electrophoresed in 10% SDS-PAGE gel and then transferred to a PVDF membrane. After blocking with 5% nonfat dry milk, the blots were incubated with the primary antibodies against GPX4 (1: 1000, DF6701, Affinity), ACSL4 (1: 1000, A14439, Ablonal), Nrf2 (1: 1000, AF7904, Affinity), SIRT-1 (1: 1000, DF6033,Affinity), and or β-actin (1: 200, ab181602, Abcam) overnight at 4°C. Subsequently, the blots were washed in TBST and incubated with a secondary antibody for 2 h at room temperature. The bands were determined with an ECL system applying an ECL kit (Applygen), and band intensities were checked by BandScan software.
+ Open protocol
+ Expand
4

Protein Extraction and Analysis of Renal Cell Carcinoma

Check if the same lab product or an alternative is used in the 5 most similar protocols
RIPA buffer solution was used to lyse RCC cells and extract total protein. The sample was placed on ice and subjected to ultrasonic cracking. The product was centrifuged for 15 min at 4 °C 12 000 rpm and supernatant was obtained. We used bicinchoninic acid(BCA) assay to measure protein concentration. The extracted protein was added to the loading buffer of 25% volume, heated for 10 min at 100 °C, and kept at −20 °C. Each sample was ran in 8% to 12% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and then transferred to the polyvinylidene fluoride membrane (Millipore), then blocked with 5% nonfat milk for 1 h at room temperature, followed by incubation overnight at 4 °C with primary antibodies (anti-STEAP3, 1:2000, Proteintech, 17186-1-AP; anti-GPX4, 1:1000, Affinity, DF6701; anti-ACSL4, 1:1000, Affinity, DF12141; anti-XCT, 1:5000, Abcam, Ab175186; anti-p53, 1:5000, Proteintech, 60283-2-IG) and incubation at room temperature for 1 h with secondary antibody. Bands were detected by ChemiDoc Touch (Bio-Rad) and quantified with ImageJ software (W S Rasband, ImageJ, NIH).
+ Open protocol
+ Expand
5

Western Blot Analysis of Cardiac Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein samples from cardiac tissue or H9c2 cells were obtained with RIPA lysis buffer (strong) containing 1% protease inhibitors and protein concentrations were determined. After concentration determination, proteins were separated by SDS-PAGE (7.5–12.5%) and transferred to PVDF membranes. The membranes were blocked with 5% skim milk and incubated overnight at 4 °C with primary antibodies Nrf2 (A21176, ABclonal), HO-1 (AF5393, Affinity), TfR1 (AF5343, Affinity), GPX4 (DF6701, Affinity), NOX4 (DF6924, Affinity), ABCB8 (A2653, ABclonal), FXN (DF6590, Affinity) (antibody dilution ratio 1: 1000) and β-tubulin (1:3000, AF7011, Affinity), respectively. The membranes were then incubated with the secondary antibody HRP Goat Anti-Rabbit IgG (H+L) (1:5000, AS014, ABclonal) for 2 h at room temperature. Protein bands detected by an enhanced chemiluminescence system were analyzed using ImageJ software.
+ Open protocol
+ Expand
6

Protein Expression Analysis in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA levels were measured by qPCR analysis following to the manufacturer’s instructions. Western blot analysis was also performed according to the manufacturer’s protocol. Briefly, cells or tissues were lysed in RIPA buffer. The protein concentrations were then normalized using a BCA assay kit (Solarbio, Beijing, China). Anti-GAPDH (1:1000, ABclonal, Wuhan, China, AC001), anti-STK33 (1:1000, Abcam, Cambridge, MA, USA, ab206296), anti-MDR1 (1:1000, Affinity, Jiangshu, China, AF5185), anti-GSS (1:1000, Affinity, DF6214), anti-MDM4 (1:1000, Affinity, DF8676), anti-P450 3A4/5 (1:1000, Affinity, AF5312), anti-E-cadherin (1:1000, Affinity, AF0131), anti-SLC7A11 (1:1000, Affinity, DF12509), anti-GPX4 (1:1000, Affinity, DF6701), anti-FTH1 (1:1000, Affinity, DF6278), anti-FSP1 (1:1000, Affinity, DF6516), anti-KRas (1:1000, Affinity, DF6324), and anti-ubiquitin antibodies (1:1000, Affinity, AF0289) were used in this study.
+ Open protocol
+ Expand
7

Penile Tissue Immunohistochemistry for Oxidative Stress

Check if the same lab product or an alternative is used in the 5 most similar protocols
IHC staining of penile tissue sections was performed using antibodies against MMP3 (ab52915, Abcam, London, UK), CDH1 (20874‐1‐AP, Proteintech, Wuhan, China), CD71 (10084‐2‐AP, Proteintech, Wuhan, China), ZIP8 (20459‐1‐AP, Proteintech, Wuhan, China), GPX4 (DF6701, Affinity Biosciences, Changzhou, China), SLC7A11 (BM5318, Boster, Wuhan, China), and ACSL4 (ab240135, Abcam, London, UK). A biotin‐conjugated secondary antibody (BA1003, Boster, Wuhan, China) was then used to incubate the sections. Based on the manufacturer's recommendations, Masson's trichrome staining (G1006, Servicebio, Wuhan, China) was used to evaluate changes in tissue structure. It was also possible to quantify the ratio of smooth muscle to collagen in the corpus cavernosum.
+ Open protocol
+ Expand
8

Immunohistochemical analysis of protein expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Briefly, the human NP tissues embedded in paraffin were cut in 15 μm sections. Then, the sections were deparaffinized with environment-friendly de-paraffin liquid (G1128, Servicebio, China) and dehydrated using gradient alcohol. The membrane-breaking solution (G1204, Servicebio, China) was used under the protocols. The sections were subsequently incubated with 3% BSA for 25 min to block the endogenous peroxidase, then with primary antibody against Sirt3 (#AF5135, Affinity, China, 1:200), GPX4 (#DF6701, Affinity, China, 1:200), FTH (#DF6278, Affinity, China, 1:50), ADAMTS5 (#DF13268, Affinity, China, 1:150), and MMP3 (#AF0217, Affinity, China, 1:100), at 4 °C overnight. On the second day, the sections were incubated with HRP-conjugated Goat Anti-Rabbit IgG H&L (511,203, ZENBIO, China, 1:300) for 1 h, finally the counterstaining was performed with hematoxylin solution for 5 min. The images of stained sections were obtained using the light microscopy (BX43, Olympus, Japan).
+ Open protocol
+ Expand
9

Immunodetection of Lipid Metabolism Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The paraffin kidney sections were applied in immunofluorescence and immunohistochemistry staining to determining the expression levels of various proteins. Primary antibodies for acyl-CoA synthetase long chain family member 4 (ACSL4) (1:200, DF12141, Affinity), glutathione peroxidase 4 (GPX4) (1:200, DF6701, Affinity), 4-hydroxynonenal (4-HNE) (1;100, MAB3249, R&D Systems). Next, the slides were exposed to DAB-labeled secondary antibodies, washed with deionized distilled water, and ultimately observed by light microscopy.
+ Open protocol
+ Expand
10

Western Blot Analysis of Ferroptosis Regulators

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed as previously described6 (link). Briefly, cells were lysed using RIPA buffer (Beyotime) with protease and phosphatase inhibitor cocktail (Beyotime), and the proteins were boiled in 5× SDS-PAGE loading buffer (EpiZyme Biotech, China) for 10 min at 100 °C. About 15–20 μg proteins were separated using SDS-PAGE (EpiZyme Biotech) and transferred onto polyvinylidene fluoride membranes (Merck-Millipore, USA). The membranes were blocked with 5% nonfat milk and incubated overnight at 4 °C with antibodies against ARG2 (1:1000, A19233, Abclonal, USA), ODC1 (1:1000, A3898, Abclonal), GPX4 (1:1000, DF6701, Affinity, USA), ACSL4 (1:1000, abs106075, Absin, China), SLC7A11 (1:1000, DF12509, Affinity), GAPDH (1:2000, AF0006, Beyotime), PAOX (1:1000, abs139256, Absin), SMOX (1:1000, abs151305, Absin), catalase (1:1000, A18018, abclonal), c-Myc (1:1000, A1309, Abclonal), TSG101 (1:1000, A1692, Abclonal), CD63 (1:500, abs149061, Absin), GM130 (1:2000, A5344, Abclonal), CD81 (1:1000, A4863, Abclonal). After the membranes were washed with Tris-buffered saline-Tween solution, the secondary antibodies were added to the membranes at room temperature. Finally, the protein bands were visualised with a BeyoECL Plus kit (Beyotime).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!