The largest database of trusted experimental protocols

23 protocols using acetyl α tubulin

1

Western Blot Analysis of Acetyl-α-Tubulin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested and washed twice with cold PBS after the indicated treatments. Cell pellets were lysed in 30μl of lysis buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% Triton X-100, 0.1% SDS, 1 mM EDTA, 1 mM Na3VO4, 1 mM NaF, and protease inhibitor cocktail) for 30 min on ice. Lysates were centrifuged at 12,000 ×g for 20 min at 4°C, and the protein content in the supernatants was determined using the Bradford reagent (Bio-Rad). Equal amount of protein lysate was resolved by SDS-PAGE and transferred onto a nitrocellulose membrane (Bio-Rad). Membranes were blocked with 5% non-fat milk powder in PBS-Tween 20 buffer for 1 h, followed by incubation with primary antibody at 4°C overnight. Membranes were washed in PBST and then incubated with HRP-conjugated anti-goat or mouse anti- IgG (Cell Signalling Technology) antibody and detected using the Millipore ECL Western Blot substrate. β-actin was used as a loading control. Antibodies were obtained from the following sources: Acetyl-α- Tubulin (Cell Signalling Technology, 3971S, 1:500), β-actin (Santa Cruz Biotechnology, sc47778, 1:2000), HRP-conjugated secondary antibodies (Santa Cruz Biotechnology, 1:2000 for β-actin blots, 1:1000 for all others). Blots shown are representative of at least two independent experiments.
+ Open protocol
+ Expand
2

Histone Deacetylase Inhibitors: Synthesis and Evaluation

Check if the same lab product or an alternative is used in the 5 most similar protocols
MPT0G236 and SAHA (vorinostat) were synthesized by Jing-Ping Liou (School of Pharmacy, College of Pharmacy, Taipei Medical University, Taipei, Taiwan) at a purity exceeding 98%; the product was previously characterized [22 (link)]. MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide), sulforhodamine B (SRB), and propidium iodide (PI) were purchased from Sigma Chemical Co. (St. Louis, MO, USA); primary antibodies against acetyl-histone H3, acetyl-α-tubulin, PARP, cleaved caspase 3, caspase 8, caspase 9, cyclin B1, cdc25C, and phosphorylated cdc2 Tyr15 (p-cdc2 (Y15)) were purchased from Cell Signaling Technologies (Beverly, MA, USA); phosphorylated mitotic protein monoclonal 2 (p-MPM2) was purchased from Millipore (Bedford, MA, USA); β-actin was purchased from ABclonal (Woburn, MA, USA); HRP-conjugated anti-mouse and anti-rabbit IgG secondary antibodies were obtained from Jackson ImmunoResearch Inc. (West Grove, PA, USA).
+ Open protocol
+ Expand
3

Immunohistochemical Detection of Caspase 3

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue sections (5 μm) were dewaxed and rehydrated. Antigen retrieval was done by autoclaving the slides in Trilogy solution (Cell Marque, Hot Springs, AR) at 121°C for 10 min. After blocking with 3% H2O2 and 5% fetal bovine serum, the slides were allowed to react with against Caspase 3, acetyl-α-tubulin (1:100, Cell Signaling) at 4°C overnight. The slides were then incubated with polymer-HRP reagent (Dako Cytomation, Glostrup, Denmark). The peroxidase activity was visualized with diamino-benzidine tetrahydroxychloride solution (DAKO). The sections were counterstained with hematoxylin. Dark brown nuclear staining was defined as positive and no staining was defined as negative.
+ Open protocol
+ Expand
4

Reevesioside A Molecular Mechanisms

Check if the same lab product or an alternative is used in the 5 most similar protocols
RPMI 1640 medium and fetal bovine serum (FBS) were obtained from GIBCO/BRL Life Technologies (Grand Island, NY). Antibodies to cyclin D1, cyclin E, cyclin A, cyclin B1, cyclin-dependent kinase 4 (Cdk4), Cdk2, PARP, E2F1, CDC25A, α-tubulin, Bcl-2, Bcl-xL, Mcl-1, Bak, Bid, Bax, Bad, Na+/K+-ATPase α3 subunit, c-myc (N262), c-myc siRNA and anti-mouse and anti-rabbit IgGs were obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Antibodies to Cdk1, retinoblastoma (RB), p-RBSer801/811, caspase-8, caspase-9, caspase-3, caspase-7, p-AktSer473, p-AktThr308, Akt, c-myc, acetyl-α-tubulin and GAPDH were from Cell Signaling Technologies (Boston, MA). Sulforhodamine B (SRB), propidium iodide (PI), phenylmethylsulfonylfluoride (PMSF), trichloroacetic acid (TCA), CGP-37157 and all other chemical compounds were obtained from Sigma-Aldrich (St. Louis, MO). Fluo-3/AM and carboxyfluorescein succinimidyl ester (CFSE) were from Molecular Probes Inc. (Eugene, OR, USA). Reevesioside A was isolated from the root of reevesia formosana. The purification and identification of reevesioside A were published elsewhere [23] (link).
+ Open protocol
+ Expand
5

Synthesis and Characterization of Anticancer Agents

Check if the same lab product or an alternative is used in the 5 most similar protocols
MPT0G211, tubastatin A (TBA), and SAHA were synthesized by Dr. Jing-Ping Liou’s Lab. (School of Pharmacy, College of Pharmacy, Taipei Medical University, Taiwan), and the purity are more than 98%. Doxorubicin (DOXO), cyclophosphamide (CTX), and vincristine (VCR) was obtained from Cayman Chemical (Ann Arbor, MI, USA). Antibodies against BCL-2, BCL-XL, cleaved caspase 3, caspase 8, caspase 9, acetyl-α-Tubulin, acetyl-histone 3, histone 3, HDAC6, survivin, p-ATM, p-ATR, p-CHK1, CHK1, cyclin B1, aurora B, p-PLK1, p-H3S10, p-CDC2 (Y15), and p-CDC2 (T161) were purchased from Cell signaling (Danvers, MA, USA). α-Tubulin, γ-H2AX, ATM, ATR, BAX, cytochrome c, and COX IV were from Genetex (Irvine, CA, USA). PARP and CDC2 were from Santa Cruz Biotechnology (Dallas, TX, USA).
+ Open protocol
+ Expand
6

Colorectal Cancer Cell Line Maintenance

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human colorectal cancer HCT116 and HT-29 cell lines were purchased from the American Type Culture Collection. Cells were maintained in 10% fetal bovine serum (FBS)-supplemented RPMI 1640 medium (GIBCO, Grand Island, NY, USA) and 1% penicillin-streptomycin (GIBCO) at 37°C in a humidified incubator containing 5% CO2. 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), propidium iodide (PI), zVAD and all of the other chemical reagents were purchased from Sigma Chemical (St. Louis, MO, USA). Antibodies against various proteins were obtained from the following sources: PARP (Poly-ADP-ribose polymerase), Mcl-1, Bcl-2, Bcl-XL, survivin, cytochrome c, Bax, Bak, Bim, anti-mouse and anti-rabbit IgGs were obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). Phospho-Akt (Ser473), phospho-GSK-3β, Akt, phospho-p44/42 MAPK (1/2 Erk) (Thr202/Tyr204), p44/42 MAPK (1/2 Erk), caspase8, caspase 9, γH2AX, p21 and acetyl-α-tubulin were obtained from Cell signaling (Danvers, MA, USA)., Actin was obtained from Chemicon (Billerica, MA, USA). Acetyl-histone H3 and GPADH were from Millipore (Billerica, MA, USA). Caspase 3 and was obtained from IMGENEX (San Diego, CA, USA).
+ Open protocol
+ Expand
7

Immunohistochemical Analysis of Cell Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin-embedded sections were prepared as described above (Histologic analysis). The sections were then deparaffinized and rehydrated. Following antigen retrieval (ZSGB-BIO, Beijing, China), sections were blocked for 1 h at room temperature in blocking solution (ZSGB-BIO), and incubated with primary antibodies against E-Cadherin (1:100; ab76319, Abcam, Cambridge, UK), Acetyl-α-Tubulin (1:100; Cell Signaling Technology (CST), Danvers, USA), Cyclin D1 (1:100; CST), Notch2 (1:50; CST), or Jag1 (1:50; CST), overnight at 4 °C. After washing three times with 1x phosphate buffered saline (PSB), sections were then incubated with secondary antibodies (ZSGB-BIO) for 1 h at room temperature. DAPI (ZSGB-BIO) was used to stain cell nucleus. Images were taken (40x), using a confocal microscope (Leica SP8; Wetzlar, Germany).
+ Open protocol
+ Expand
8

Antibody Validation for Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies used in this study were purchased from Cell Signaling: acetyl-α-tubulin (1:1000; #5335), TAB1 (1:1000; #3226), pERK (1:2000; #9101), total ERK (1:2000; #4695), pAKT-S473 (1:1000; #4060), pP38 (1:2000; #4511), pJNK (1:2000; #9255), cMYC (1:2000; #13987), pGSK3β-Ser9 (1:2000; #5558), total GSK3β (1:2000; #12456), pTAK1 (1:1000; #9339), total TAK1 (1:1000; #4505), total AKT (1:1000; #4691), pPRAS40 (1:2000; #2997), total PRAS40 (1:2000; #2610), pSmad2 (1:1000; #8828), and Myc-Tag (1:4000; #2276). Total tubulin YOL1/34 (1:2000; MCA78G) (Abcam), αHA (1:3000; #11867431001), α-Flag (1:4000; F1804) (Sigma), αTAT1 phosphoserine 237 (1:250) (Thermo Scientific), and αTAT1 (1:500; sc-167354) (Santa Cruz) were also used.
+ Open protocol
+ Expand
9

Antibody Generation and Validation for Acetylation-Specific HMGN2

Check if the same lab product or an alternative is used in the 5 most similar protocols
Rabbit polyclonal ac-K2-HMGN2 antibody was made by New England Peptides. The antibody was raised against an acetylated N-terminal HMGN2 peptide (P(KAc)RKAEGDAC), followed by affinity purification. To ensure specificity, a blocking peptide (P(KAc)RKAEGDAC) and a non-acetyl blocking peptide (PKRKAEGDAC) were used to ensure acetyl-specific interaction. Antibodies used for western blotting; Tubulin (Invitrogen, 322500, 1:2000); HDAC6 (Abcam, ab47181, 1:500); HMGN2 (Millipore, 07-252, 1:500; Cell Signaling, #9437, 1:2000) pan-acetyl lysine (Millipore, AB3879, 1:500); CISH (Santa Cruz, sc-15344, 1:500); CyclinD1 (Santa Cruz, sc-718, 1:500); CEBPβ (Santa Cruz, sc-150, 1:500); PARP/Cleaved PARP (Cell Signaling, #9542, 1:500); ac-K2-HMGN2 (1:50); acetyl-α-Tubulin (Cell Signaling, #5335, 1:500). Secondary antibody was used at a dilution of 1:1000 for all antibodies except Tubulin, which was 1:2000. Antibodies used for IHC: CyclinD1 (Santa Cruz, sc-718, 1:1500); acetyl-Tubulin (Cell Signaling, D20G3, 1:100); ac-K2-HMGN2 (1:500).
+ Open protocol
+ Expand
10

Liraglutide-Induced Cellular Responses

Check if the same lab product or an alternative is used in the 5 most similar protocols
Clinical-grade liraglutide was obtained from Novo Nordisk (Princeton, NJ, USA). Antibodies against GLP-1R, Bax and Bcl-2 were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against LC3, LC3-II and acetyl-α-tubulin were acquired from Cell Signaling Technologies (Danvers, MA, USA). Antibodies against P62, beclin-1, p-mTOR, mTOR, and caspase3 were purchased from Abcam (Cambridge, MA, USA). All other reagents were obtained from Sigma-Aldrich (St. Louis, MO, USA) unless specified otherwise.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!