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Mtp anchorchip target plate

Manufactured by Bruker

The MTP Anchorchip target plate is a specialized sample preparation tool for matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. It provides a uniform and optimized surface for the deposition and analysis of various samples, including proteins, peptides, and small molecules.

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4 protocols using mtp anchorchip target plate

1

MALDI-TOF Analysis of KDAC Deacetylation

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Several concentrations of KDAC6 and KDAC8 were incubated with 50 μM substrate for either 10 min (KDAC6) or 60 min (KDAC8) at 25 °C. Reactions were stopped by adding SAHA to a final concentration of 100 μM. The reaction was diluted 1:100 in TA85 (85% acetonitrile, 15% water, 0.1% trifluoroacetic acid). 0.5 μl was spotted onto a MTP Anchorchip target plate (Bruker Daltonics) and allowed to dry. 0.5 μl matrix (1.4 mg/ml α-cyano-4-hydroxycinnamic acid in TA85) was spotted on top of each sample. Samples were analyzed by matrix assisted laser desorption/ionization (MALDI) time-of-flight (TOF) mass spectrometry (MS) on an Autoflex Speed MALDI TOF/TOF (Bruker Daltonics) in positive reflector mode and masses were assigned to peaks using flexanalysis software (Bruker Daltonics). For each enzyme-substrate pair containing the highest enzyme concentration, samples were also analyzed in LIFT mode to obtain MS/MS spectra for the substrate and products. Spectra were analyzed in flexanalysis for the presence or absence of diagnostic y-ion peaks to distinguish between deacetylation at lysine positions 3 and 4, and the presence of expected a-ion, b-ion, and y-ion peaks confirmed by sequencing analysis using Biotools (Bruker Daltonics).
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2

MALDI-TOF MS Analysis of Histone Deacetylation

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Detection of deacetylation by matrix-assisted laser desorption/ionization
(MALDI) time-of-flight (TOF) mass spectrometry (MS) on an Autoflex Speed MALDI
TOF/TOF (Bruker Daltonics) was performed on ac-FR{Kac}RW-am reacted overnight
with KDAC8 at 25 °C as described previously.31 (link) Briefly, reactions were initiated as
described above for fluorescence assays. After addition of SAHA, samples were
diluted 1:100 in TA85 (85% acetonitrile, 15% water, and
0.1% trifluoroacetic acid). 0.5 μL was spotted onto a MTP
Anchorchip target plate (Bruker Daltonics) and allowed to dry, and 0.5
μL of matrix (1.4 mg mL−1α-cyano-4-hydroxycinnamic acid in TA85) was spotted on each sample.
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3

MALDI-TOF MS Analysis of Bacterial Cells

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Bacterial cells were separated from the growing media by centrifugation (13 000 rpm × 3 min), and washed three times with DI water. Finally, the resulting cellular pellet was resuspended in DI water at a concentration of 108 cells per mL. Bacteria solutions with different concentrations were obtained by dilution with DI water. 1 μL of each solution was deposited on a MALDI target plate, and dried at room temperature (RT). For sample deposition, three different protocols were conducted. In the first (the routine procedure), the whole 1 μL of solution was deposited on a Bruker ground steel target plate, and the dried sample spot size was about 3 mm in diameter. In the second, 1 μL of solution was deposited on the target plate with four repetitions (0.25 μL in each repetition), droplet-by-droplet, in order to keep the sample spot as small as possible (<0.8 mm in diameter). In the third, a Bruker MTP AnchorChip target plate was employed, where the dried sample spot from 1 μL of a bacteria solution could be confined within a well that was 0.8 mm in diameter. DHB matrix (1 μL, 10 mg mL–1 in Vacetonitrile/Vwater/VTFA 50/49.5/0.1) was added to cover the dried sample spots with the corresponding protocol for MALDI-TOF MS analysis. Each test was repeated 3–5 times. A library of bacteria reference mass spectra was built from the spectra obtained with the reduced sample spot size.
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4

MALDI-TOF MS Analysis of His6-tagged KDAC

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Approximately 2 μg of His6-tagged KDAC was incubated with 0.1 μg TEV protease in TEV cleavage buffer overnight at 4 °C. Reactions were diluted 1:10 in TA85 (85% acetonitrile, 15% water, 0.1% trifluoroacetic acid). 0.5 μl was spotted onto a MTP Anchorchip target plate (Bruker Daltonics) and allowed to dry. 0.5 μl matrix (1.4 mg/ml α-cyano-4-hydroxycinnamic acid in TA85) was spotted on top of each sample. Samples were analyzed by matrix assisted laser desorption/ionization (MALDI) time-of-flight (TOF) mass spectrometry (MS) on an Autoflex Speed MALDI TOF/TOF (Bruker Daltonics) in positive reflector mode and masses were assigned to peaks using flexanalysis software (Bruker Daltonics).
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