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12 protocols using luminex 100 system

1

Inflammatory Response Profiling in IBD and CDI

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Based on literature demonstrating a correlation between the host inflammatory response and disease severity, 12 cytokines and chemokines [(interleukin-1 beta (IL-1β), IL-10, IL-17, IL-6, IL-25, IL-22, IL-23, IL-4, IL-13, Tumor Necrosis Factor alpha (TNF-α), IL-8 (KC), granulocyte-macrophage colony-stimulating factor (GM-CSF))] related either to IBD or CDI were assayed in colonic tissue samples with MCYTOMAG-70k and MTH17MAG-47k kits by Luminex 100 system (EMD Millipore Corp, Billericia, MA, USA).21 (link)–24 (link) Briefly, colonic samples were separately weighed and homogenized in PBS containing 1× HALT protease inhibitor (Pierce, Rockford, IL, USA) and 5 mM HEPES (Sigma-Aldrich, St. Louis, MO, USA), then sonicated for 30 seconds to get a homogenous suspension. The sonicated colonic samples were centrifuged at 4 °C, 12,000 rpm for 15 minutes and supernatants were collected and stored at −80 °C until assay. The total protein concentration was assessed by BCA assay according to the manufacturer’s instructions (Pierce). All cytokine and chemokine concentrations were shown relative to total protein concentration.
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2

Cytokine Measurement in Mouse

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Mouse IL-17A and IFNγ were measured using the corresponding ELISA Max Deluxe Sets by from BioLegend. In some cases, supernatants were also evaluated for IL-17A, IFNγ, IL-6, IL-22, and TNFα using the MILLIPLEX © system from EMD Millipore in a Luminex100 system at the Hormone Assay Core at Vanderbilt University (supported by NIH grants DK059637 and DK020593).
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Serum Cytokine Profiling in Mice

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Retro-orbital blood was collected from mice and serum prepared by centrifugation after clotting of blood. Serum was incubated with a Milliplex multi-analyte panel for mouse cytokines (EMD Millipore, Billerica, Massachusetts) and analyzed on a Luminex 100 system.
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4

Cytokine Profiling of Epithelial Responses

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Concentrations of cytokines released to apical and basolateral cell culture supernatants upon stimulation with fish PVs or LMC were measured 24 h after apical cell stimulation. Quantification of the cytokines was performed using the xMAP Technology reagents and the Luminex 100 System supported by the xPONENT software, according to the protocols recommended by the manufacturer (Merck Millipore, Massachusetts, USA). IL-6, IL-8 and CCL2 were measured using the HCYTOMAG-60K kit. IL-25 and IL-33 were measured by the HTH17MAG-14K kit, and TSLP by the HCYP2MAG-62K kit (all three kits from Merck Millipore). Stimulation of the cells with TNFα (50 ng/mL) and IL-1β (20 ng/mL) was used as a positive control for release of proinflammatory cytokines (Ozaki et al., 1996 (link); Tanaka et al., 2014 ; Tobe et al., 2002 (link)). Cytokines were measured in supernatants derived from 3 independent experiments performed in duplicates. The selection of the cytokines was made based on the published literature on the importance of these cytokines in epithelial cell damage response and allergic sensitization (Chow et al., 2010 (link); Kosaka et al., 2011 (link); Lee et al., 2015 (link); Yi et al., 2017 (link)).
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5

Cytokine Profiling of Epithelial Responses

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Concentrations of cytokines released to apical and basolateral cell culture supernatants upon stimulation with fish PVs or LMC were measured 24 h after apical cell stimulation. Quantification of the cytokines was performed using the xMAP Technology reagents and the Luminex 100 System supported by the xPONENT software, according to the protocols recommended by the manufacturer (Merck Millipore, Massachusetts, USA). IL-6, IL-8 and CCL2 were measured using the HCYTOMAG-60K kit. IL-25 and IL-33 were measured by the HTH17MAG-14K kit, and TSLP by the HCYP2MAG-62K kit (all three kits from Merck Millipore). Stimulation of the cells with TNFα (50 ng/mL) and IL-1β (20 ng/mL) was used as a positive control for release of proinflammatory cytokines (Ozaki et al., 1996 (link); Tanaka et al., 2014 ; Tobe et al., 2002 (link)). Cytokines were measured in supernatants derived from 3 independent experiments performed in duplicates. The selection of the cytokines was made based on the published literature on the importance of these cytokines in epithelial cell damage response and allergic sensitization (Chow et al., 2010 (link); Kosaka et al., 2011 (link); Lee et al., 2015 (link); Yi et al., 2017 (link)).
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6

Multiplex Assay of 38 Human Cytokines/Chemokines in CSF

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CSF concentrations of 38 human cytokines/chemokines (sCD40L, EGF, Eotaxin, FGF-2, Flt-3 ligand, Fractalkine, G-CSF, GM-CSF, GRO, IFN-α2, IFN-γ, IL-1α, IL-1β, IL-1ra, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-12p40, IL-12p70, IL-13, IL-15, IL-17A, IP-10, MCP-1, MCP-3, MDC, MIP-1α, MIP-1β, TGF-α, TNFα, TNF-β, and VEGF) were simultaneously measured using a magnetic bead-based multiplex kit (HCYTMAG-60K-PX38, EMD Millipore, Billerica, MA) as per the manufacturer’s instruction. Samples were incubated with beads at 4 °C for 16 h with shaking at 500 rpm, and subsequently washed twice using a hand-held magnetic plate washer (eBioscience, San Diego, CA). The beads were incubated with the biotinylated detection antibody for 1 h at room temperature with shaking at 500 rpm, followed by incubation with streptavidin-PE for 30 min at room temperature with shaking at 500 rpm. After washing twice, the beads were resuspended in shield buffer and read on a Luminex-100 system (EMD Millipore, Billerica, MA) with a setting of 40 beads per bead set and 150 s per well. The standards (3.2–10,000 pg/mL) provided in the HCYTMAG-60 K-PX38 kit were run on each plate in duplicate, and used to calculate the concentrations of cytokines/chemokines using the Bio-Plex Manager Software (Bio-Rad, Hercules, CA).
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7

Cytokine Release in Arterial Injury

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WT and PI3Kγ KD mice were submitted (n = 14 per group) or not (n = 6 per group) to mechanical femoral artery injury. 15 d after injury, mice were sacrificed. Arteries were harvested and cut into 3-mm-long rings. Rings were cultured in DMEM supplemented with 10% FBS and 1% penicillin-streptomycin (complete medium) for 4 h. Then, the medium was replaced with complete medium with added PMA (1 µg/ml) and ionomycin (1 µg/ml) to stimulate cytokine release. 3 d later, the supernatants were collected. Cytokine levels in the supernatants were measured according to the immunoassay protocol for MILLIPLEX Map Mouse Cytokine/Chemokine Magnetic Bead Panel kit (Millipore) on the Luminex 100 system at the “Phénotypage” service (Anexplo platform). Cytokine levels were determined in pg/ml compared with a standard range.
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8

Multiplex Analysis of Mouse Serum Proteins

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Peripheral blood samples were obtained from facial submandibular veins of mice using Golden Lancets (4 mm, Medipoint), and collected into a BD Microtainer Capillary Blood Collector (Cat. 365967). After centrifugation at 400 × g for 5 mins. Sera were harvested and frozen in a −20 °C freezer before analysis. Mouse APP concentration including serum amyloid protein/pentraxin-2 (SAP), adipsin, alpha-1 acid glycoprotein (AGP), and alpha-2 macroglobulin (A2M) were determined using a Multiplex kit (Millipore; MAP2MAG-76K-04) under standard procedures and analyzed by Luminex® 100 system. Mouse IL-6 and TNF were determined using the BD CBA flex set system (Cat. 558301 and 558299) and analyzed by FCAP Array software (BD Bioscience).
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9

Measuring Oxidative Stress Biomarkers in Serum

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The levels of HMGB1 and RAGE were measured using commercially available enzyme-linked immunosorbent assay kits (HMGB1: Shino-test, Kanagawa, Japan; RAGE: R&D Systems, Minneapolis, MN, USA). Interleukin 6 (IL-6), TNF-α and chemokine (C-X-C motif) ligand 1 (CXCL-1) were measured with a Mouse Cytokine/Chemokine-Magnetic Bead Panel (Millipore, Billerica, MA, USA) in a Luminex 100 system (Millipore). The serum concentration of hydroperoxides (whole oxidant capacity of serum against N,N-diethylparaphenylene-diamine in acidic buffer) was measured as described previously [27 (link)]. The measurement unit was CARR U. It has been previously established that 1 CARR U corresponds to 0.08 mg hydrogen peroxide/dL [30 (link)].
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10

VEGF Quantification via Luminex Assay

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VEGF concentrations of serum samples were quantified using MILLIPLEX MAP human cytokine/chemokine panel (Cat. number MPXHCYTO-60 K, Millipore, Billerica, MA, USA) in conjunction with a Luminex 100 system (Austin, TX, USA). Undiluted samples were assayed in duplicate and technical replicates with greater than 10% variance were repeated. The serum concentration of VEGF from both readouts was averaged and used for subsequent data analysis.
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