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Quickchange 2 site directed mutagenesis kit

Manufactured by Qiagen
Sourced in Belgium

The QuickChange II site-directed mutagenesis kit is a laboratory tool used to introduce specific mutations into double-stranded plasmid DNA. It provides a simple and efficient method for site-directed mutagenesis without the need for subcloning or single-stranded DNA preparation.

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2 protocols using quickchange 2 site directed mutagenesis kit

1

Generation of SLCO2A1 Mutants for Inducible Expression

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SLCO2A1 mutants A396E, A396T and L563P were generated using QuickChange II site-directed mutagenesis kit (Qiagen) using pDONR221-SLCO2A1 (Addgene, plasmid #131949) as template DNA and primers were obtained from Integrated DNA Technologies (IDT, Leuven, Belgium). Successful mutant generation was confirmed by Sanger sequencing at LGTC (Leiden, the Netherlands). Next, to enable doxycycline-inducible expression of the generated mutants gateway cloning was used to transfer SLCO2A1 mutants from the pDONR vector to a pJTI-R4-DEST-CMV expression vector containing a tet-operon for doxycycline-induction and C-terminal twin-Strep-tag and hemagglutinin (HA)-tag. In brief, 150 ng entry vector pDNOR221-SLCO2A1-mutant (i.e., A396E, A396T or L563P) and 150 ng destination vector pJTI-R4-DEST-CMV were incubated with Gateway LR Clonase II enzyme in TE buffer for 1h at 25°C. The mixture was incubated with Proteinase K solution for 10 min at 37°C prior to transformation into XL-1 blue competent cells. Plasmids were isolated using NucleoBond xtra midiprep kit (Macherey-Nagel, Germany) and sequences were again confirmed by Sanger sequencing. HEK293-JumpIn-parental cells were stably transfected with cDNA of PGT mutants in pJTI-R4 vector using lipofectamine as described previously (Gorostiola González et al., 2023 (link)).
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2

Plasmid Construction for Lysine Probe Assay

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Example 91

Plasmids Used for Lys Washout and Covalent Probe:

FIG. 10 depicts lysine covalent probe compound XVI-27 modifying NS3/4A C159S. The pCI-Neo-FLAG-NS3/4a-WT plasmid was constructed by amplifying the NS3 and 4a sequence from the pFK-I389-luc-ubi-neo-NS3-3′ET vector using Accuprime Pfx (Invitrogen) according to manufacturer's instructions and with primers that added an NheI site and FLAG epitope tag to the 5′ end and an XbaI site to the 3′ end.

(SEQ ID NO: 176)
(FTAATAAGCTAGCACCATGGACTACAAAGATGATGACGATAAAGGAGCG
CCTATTACGGCCTACTCCCAACAG,
(SEQ ID NO: 177)
R-TTATTATCTAGACTAGCACTCTTCCATCTCATCGAACTCCCGGTAA
AG).

The resulting PCR product was then digested with NheI and XbaI and ligated into the same sites of the pCI-Neo vector (Invitrogen). The WT construct was then used as a template for site-directed mutagenesis using the Quickchange II Site-Directed Mutagenesis kit (Qiagen) and primers containing the K136R or C159S mutations (below).

NS3-C159S-F
(SEQ ID NO: 178)
ATCTTTCGGGCTGCCGTGAGCACCCGAGGGGTTGCGAAG
NS3-C159S-R
(SEQ ID NO: 179)
CTTCGCAACCCCTCGGGTGCTCACGGCAGCCCGAAAGAT
NS3-K136R-F
(SEQ ID NO: 180)
GTCTCCTACTTGAGGGGCTCTTCGGGCGGT
NS3-K136R-R
(SEQ ID NO: 181)
ACCGCCCGAAGAGCCCCTCAAGTAGGAGAC

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