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6 protocols using citrate buffer

1

Investigating Epigenetic Regulation in Cell Lines

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The reagents and antibodies used in the study are as follows: fetal bovine serum (Gibco, USA), RPMI 1640 medium (Gibco; Life Technologies, CA, USA), Dulbecco's modified Eagle medium (Hyclone; Thermo Fisher Scientific, MA, USA), MTT (Amresco Inc, Solon, OH, USA), penicillin G and streptomycin (North China Pharmaceutical Co., Ltd, Shijiazhuang, China), polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA), citrate buffer (Zhongshan Goldenbridge Biotechnology Co., Ltd., Beijing, China), and hematoxylin (Sigma-Aldrich, St. Louis, MO, USA). All the antibodies were purchased from Cell Signaling Technology, USA. The antibodies include Ac-H3, acetyl-histone H3 (Lys9) rabbit mAb 1:1000 (#9649, CST); Ac-H4, acetyl-histone H4 (Lys8) rabbit polyclonal antibody 1:1000 (#2594, CST); Actin rabbit polyclonal antibody 1:5000 (SC-1616, Santa Cruz); PARP polyclonal antibody 1:1000 (#9542, CST); Bax rabbit mAb 1:1000 (#5023,CST); Bcl-2 rabbit mAb 1:1000 (#2870, CST); and goat anti-rabbit peroxidase-coupled antibody (Zhongshan Golden Bridge Biotechnology, diluted 1:5,000). APC Annexin V was purchased from Invitrogen. Fluorescein isothiocyanate dextran and tCA were purchased from Sigma. 5-(N-ethyl-N-isopropyl) amiloride (EIPA) was from Life Technologies (Beijing).
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2

Immunohistochemical Analysis of Xenograft Specimens

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HT29 xenograft specimens were used for immunohistochemical detection of related proteins, such as acetyl-H3, cleaved PARP and cleaved caspase-3. Sections (4 µm) were deparaffinized and rehydrated with xylene and graded alcohol solutions. After washing with PBS, endogenous peroxidase activity was quenched with 3% hydrogen peroxide. Sections were boiled in 10 mM citrate buffer (pH 6.0; Zhongshan Goldenbridge Biotechnology Co., Ltd.) for 3 min in an autoclave sterilizer (Zealway Instrument Inc., Xiameng, China) followed by cooling at room temperature for >20 min. After rinsing with PBS, sections were incubated with all primary antibodies used in the western blot analysis (1:100 diluted in antibody diluent, Zhongshan Goldenbridge Biotechnology Co., Ltd.) for 18 h at 4°C. Sections were stained with the related antibodies. After rinsing with PBS, the sections were incubated with PV6001 or PV6002 (Zhongshan Goldbridge Biotechnology Co., Ltd.) for 30 min at 37°C and stained with DAB (AR1022, Boster Biological Technology, Ltd., Wuhan, China) for 1 to 2 min. The slides were counterstained with hematoxylin (Sigma-Aldrich), dehydrated with ethanol, cleared with xylene and mounted in neutral gum. Control sections were incubated with PBS instead of a primary antibody. All slides were analyzed by two independent observers.
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3

Rat Model of Cyclin Protein Expression

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Eighty male SD rats (SPF) weighing 250-300g were purchased from Beijing Huafukang Biotechnology Co., Ltd. (license No.: SCXK (Beijing) 2009-0004). The rats were randomly divided into normal group, model group, intensity I group and intensity II group, with 20 rats in each group. Four time points were set for each group (3h, 6h, 24h and 48h), with 5 rats tested in each group at each time point (As shown in Figure 5). The room temperature was controlled at 23±2°C, with natural illumination. Rabbit anti-rat antibodies against cyclin A and cyclin E were purchased from Beijing Biosynthesis Biotechnology Co., Ltd. DAB substrate kit, PBS buffer and citrate buffer were purchased from Beijing Zhongshan Golden Bridge Biotechnology Co., Ltd. Equipments used were as follows: electrocoagulator (Department of Neurosurgery, Affiliated Hospital of North China University of Science and Technology), ZH-PT treadmill running deck (Huaibei Zhenghua Biological Apparatus Co., Ltd.), optical microscope (Olympus, Japan), microtome (Leica, Germany), and constant-temperature incubator (Hirasawa).
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4

Immunohistochemical Detection of Wip1 in Tissue Sections

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The tissue sections were deparaffinized in xylene (Sinopharm Chemical Reagent Co., Ltd.), hydrated with 100% and 95% ethanol (Sinopharm Chemical Reagent Co., Ltd.), and then rinsed in distilled water. Endogenous peroxidase was blocked with 0.1% H2O2 (Zhongshan Golden Bridge Biotechnology Co., Ltd., Beijing, China) for 20 min. The sections were prepared by microwave antigen retrieval in 10 mM citrate buffer (pH 6.0; Zhongshan Golden Bridge Biotechnology Co., Ltd.) for 10 min. The slides were subsequently incubated with serum blocking solution (Zhongshan Golden Bridge Biotechnology Co., Ltd.) for 1 h at 37°C, rabbit anti-human polyclonal anti-Wip1 primary antibody (catalog no., SC-20712; 1:100 dilution; Santa Cruz Biotechnology, Inc., Dallas, TX, USA) overnight at 4°C, goat anti-rabbit biotinylated secondary antibody (catalog no., ZB2010; dilution, 1:100; Zhongshan Golden Bridge Biotechnology Co., Ltd.) for 1 h at 37°C and streptavidin-horseradish peroxidase. 3,3′-Diaminobenzidine solution (Sigma-Aldrich) was used as a chromogen. The slides were then counterstained in a hematoxylin solution (Sigma-Aldrich) and visualized on the DM IL LED microscope (Leica Microsystems GmbH). Negative controls were performed by omitting the primary antibody incubation step.
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5

Pancreatic Microcirculation Evaluation

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HE staining was applied to evaluate the morphological changes in pancreatic microcirculation. After fixing with 4% paraformaldehyde, pancreatic tissues were embedded in paraffin and cut into five‐micrometer‐thick sections for HE staining and immunohistochemical staining. Briefly, sections were deparaffinized, rehydrated, and incubated in boiling 10 mM citrate buffer (pH = 6.0, Zhongshan Golden Bridge Biotechnology, Beijing, China) for antigen retrieval. And then, sections were incubated with 3% hydrogen peroxide to inhibit endogenous peroxidase, followed by blocking with 3% bovine serum albumin (BSA, TBD Science Technology, Tianjin, China) in phosphate‐buffered saline. After incubating with primary mouse monoclonal antibody raised against insulin (2D11‐H5) (dilution 1: 50; Santa Cruz Biotechnology, Dallas, TX) and PECAM‐1 (dilution 1: 50; Santa Cruz Biotechnology), sections were incubated in blocking buffer overnight at 4°C. Then, horseradish peroxidase–conjugated secondary antibody (Zhongshan Golden Bridge) and 3,3'‐diaminobenzidine tetrahydrochloride solution (Zhongshan Golden Bridge) were employed for the incubation of sections, which was monitored on a microscope. Finally, the sections were dehydrated and mounted. Positive staining of insulin and PECAM‐1 were determined using a Leica DFC450 microscope (Leica Microsystems, Leitz, Germany).
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6

Immunohistochemical Staining of EpCAM

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The tissue slices (4 μm) were deparaffinized with xylene and rehydrated in a graded alcohol series and distilled water. After blocking the endogenous peroxidase with hydrogen peroxide, citrate buffer (ZhongShan Golden Bridge Biotechnology Co., Ltd) was used to perform antigen retrieval in water bath at 95°C for 35 minutes. After naturally cooling down, the slices were incubated with primary monoclonal antibody to EpCAM (1:800, Abcam) at 4°C overnight. Subsequently, these slices were incubated with peroxidase-conjugated polymer (EnVisionTM Detection Kit, Gene Tech (Shanghai) Company Limited) for 30 minutes at room temperature. Finally, the slices were stained with diaminobenzidine chromogen solution (1:50, EnVisionTM Detection Kit, Gene Tech (Shanghai) Company Limited) and counterstained with hematoxylin (ZhongShan Golden Bridge Biotechnology Co., Ltd). Primary antibody incubation was omitted in negative controls. The figures were captured through Axio Imager A2 (Zeiss) and Scope A1 (Zeiss).
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