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6 protocols using protease and phosphatase 3 inhibitor cocktail

1

Quantifying CXCL12β in IL-1β-Treated BMECs

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Brain microvascular endothelial cells (BMECs) were treated with IL-1β (10 ng/ml) overnight and protein lysates were isolated using RIPA buffer supplemented with protease and phosphatase-3 inhibitor cocktail (Sigma). Lysates were resolved on a 4-12% Bis-Tris gel and transferred on to an iBlot Nitrocellulose transfer membrane (Invitrogen) according to standard protocols. Blots were probed with polyclonal rabbit anti-CXCL12β (eBioscinec) and monoclonal mouse anti-β-tubulin (Sigma) antibodies flowed by incubation with IRDye®-conjugated secondary antibodies (LI-COR). Blots were imaged using the Odyssey fluorescent scanning system (LI-COR) and analyzed using ImageJ.
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2

Western Blot Analysis of PD-L1 in Astrocytes

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Protein lysates were collected from primary human and murine spinal cord astrocytes in radioimmunoprecipitation assay (RIPA) buffer (Sigma-Aldrich) supplemented with a protease and phosphatase-3 inhibitor cocktail (Sigma-Aldrich), then 20 μg of protein was resolved on a 4–12% Tris gel and transferred to a polyvinylidene difluoride (PVDF) membrane using the Trans-Blot Turbo system (Bio-Rad) according to standard protocols. Membranes were incubated overnight at 4 °C in Tris-buffered saline, 0.1% Tween® 20 (TBST), and 5% powdered milk. Membranes were blotted with anti-human PD-L1 (Invitrogen; 14-9969-82), anti-mouse PD-L1 (BioLegend; 135202), and anti-β-actin (ThermoFisher Scientific; MA5-15739) antibodies, washed with TBST 3 times, and then incubated with HRP-conjugated secondary antibodies (ThermoFisher Scientific) for 1 h at room temperature. Membranes were washed with TBST 3 times and imaged using the ChemiDoc MP imaging system (Bio-Rad) after activation with ECL substrate solution.
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3

Astrocyte VCAM-1 and CXCR7 Expression

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Human brain stem and spinal cord astrocytes (ScienCell) were seeded in six‐well plates until confluent and treated with media alone or recombinant human cytokine for 24 hr. Protein lysate (20 μg) was isolated using RIPA buffer supplemented with a protease and phosphatase‐3 inhibitor cocktail (Sigma‐Aldrich). Lysates were resolved on a 4–12% Tris gel and transferred onto a PVDF transfer membrane (Invitrogen) using an iBlot2 system according to standard protocols. Blots were probed with polyclonal rabbit anti‐VCAM‐1 or ‐CXCR7 (ThermoFisher) and monoclonal mouse anti‐β‐actin (ThermoFisher) antibodies, followed by incubation with appropriate HRP‐conjugated secondary antibodies (ThermoFisher). Blots were imaged using a BioRad ChemiDoc MP imaging system.
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4

Western Blot Analysis of Astrocyte Proteins

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Protein lysates were collected from regional human astrocytes in radioimmunoprecipitation assay (RIPA) buffer (Sigma-Aldrich) supplemented with a protease and phosphatase-3 inhibitor cocktail (Sigma-Aldrich), then 20 μg of protein was resolved on a 4-12% Tris gel and transferred to a polyvinylidene difluoride (PVDF) membrane using the Trans-Blot Turbo system (Bio-Rad) according to standard protocols. Membranes were incubated overnight at 4 °C in Tris-buffered saline (TBS), 0.1% Tween® 20 (TBST) plus 5% powdered milk and anti-LMP2 (Abcam; ab184172) or anti-Lys48 (Millipore; 05-1307) and anti-β-actin (ThermoFisher Scientific; MA5-15739) antibodies, washed with TBST 3 times, and then incubated with Alexa Fluor 488, 647, or HRP-conjugated secondary antibodies (ThermoFisher Scientific) for 1 h at room temperature. Membranes were washed with TBST 3 times and imaged using the ChemiDoc MP imaging system (Bio-Rad).
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5

Immunoblotting of Brainstem and Spinal Cord Astrocytes

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Human brainstem and spinal cord astrocytes (ScienCell) were seeded in 6-well plates until 70–80% confluent and treated with media alone or 10 ng/ml IFNγ for 48 h. Protein lysate was isolated in RIPA buffer supplemented with a protease and phosphatase-3 inhibitor cocktail (Sigma-Aldrich). Lysate (20 μg) was then subjected to derivatization according to manufacturer’s instructions (Millipore) and resolved on a 4–12% Tris gel and transferred onto a PVDF transfer membrane (Bio-Rad) using the Trans-Blot Turbo system (Bio-Rad) according to standard protocols. Membranes were incubated overnight at 4 °C in TBST plus 5% powdered milk and probed with either anti-DNP (Millipore; S7150) or anti-β-actin (ThermoFisher Scientific; MA5-15739) primary antibodies, washed with TBST 3 times, and then incubated with HRP-conjugated secondary antibodies (Millipore) for 1 h at room temperature. Membranes were washed with TBST 3 times, imaged using the ChemiDoc MP imaging system (Bio-Rad), and analyzed as previously described [68 (link)].
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6

CXCL12β Protein Expression Analysis

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The caudal CC was dissected and 10 µg protein lysates were isolated using RIPA buffer supplemented with a protease and phosphatase-3 inhibitor cocktail (Sigma-Aldrich). Lysates were resolved on a 4–12% Bis-Tris gel and transferred onto an iBlot Nitrocellulose transfer membrane (Invitrogen) according to standard protocols. Blots were probed with polyclonal rabbit anti-CXCL12β (eBioscience) and monoclonal mouse anti–β-tubulin (Sigma-Aldrich) antibodies, followed by incubation with IRDye-conjugated secondary antibodies (LI-COR). Blots were imaged using the Odyssey fluorescent scanning system (LI-COR) and analyzed using ImageJ (National Institutes of Health).
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