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Dextran alexa568

Manufactured by Thermo Fisher Scientific

Dextran-Alexa568 is a fluorescently labeled dextran compound. Dextran is a polysaccharide that can be used as a molecular weight marker or tracer. The Alexa568 fluorophore is conjugated to the dextran, allowing for visualization and detection using fluorescence-based methods.

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6 protocols using dextran alexa568

1

Live Imaging of Drosophila Larval Salivary Glands

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Live imaging of larval salivary glands was performed as previously reported (Tran et al., 2015 (link)). In short, naturally secreting isolated glands were placed in a glass-bottom imaging dish, covered with a Isopore 0.1 µm PC membrane (Merck) and 50 µl Schneider's Drosophila medium. For long-term imaging, the imaging chamber was humidified with a wet tissue paper and sealed with parafilm to prevent evaporation. Dissected glands were imaged with a Zeiss CellObserver Z.1 with a Yokogawa CSU-X1 spinning disc scanning unit and an Axiocam MRm CCD camera (6.45 µm×6.45 µm). For additional Dextran imaging, dissected glands were incubated for 1 h with 200 µM Dextran-Alexa568 (molecular mass 10,000, Invitrogen) in Schneider's Drosophila medium, washed three times with medium and then placed on an imaging chamber as described above.
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2

Quantifying Endo-lysosomal Fusion in CHO Cells

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CHO WT and CHO ΔXylT cells were seeded on coverslips for pulse-chase experiments. In brief, CHO cells were first incubated with dextran-Alexa568 (10,000 MW, 0.4 mg/mL) (Invitrogen) for 4 h, washed and incubated in dextran-free CHO medium for 18 h. Cells were then pulsed with dextran-Alexa488 (10,000 MW, 0.4 mg/mL) for 10 min, washed and incubated in CHO medium for 30 min. CHO WT and CHO ΔXylT cells were fixed with 4% PFA, and stained with phalloidin-iFluor 647 Reagent (1:1000) (Abcam) and DAPI. Images of 20 random FOVs were acquired on Zeiss Apotome.2 microscope with 63 × oil immersion objective using AxioVision 4.9.1 software (Zeiss). Spatial resolution of images was 9.7674 pixels per micron, pixel size: 0.1024 × 0.1024 micron2. Endo-lysosomal fusion was scored by quantifying co-localization between the two labeled dextrans using ImageJ version 1.52e and JACoP plugin for pixel intensity spatial correlation analysis (37 (link)). Pearson’s correlation coefficient and Manders split coefficients (M1 and M2, thresholds set manually for both channels) were calculated.
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3

Live Imaging and Microinjection of Drosophila Embryos

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Embryos were dechorionated in 50% bleach solution for 2 min and then washed with water. Embryos were then relocated to a slide with a gas-permeable membrane in Halocarbon 27 oil (Sigma-Aldrich), covered with a coverslip and imaged. Live imaging of embryos was performed on a CSU10b Yokogawa spinning-disk confocal from Zeiss and Solamere Technologies Group with a 63×/1.4 NA objective. For slow movies, images were acquired in 30 s intervals with 27-30 z-slices at a 0.5 µm interval. Fast movies involved a single z-slice and 0.5-1 s intervals. For drug injection, after dechorionation as above, embryos were dehydrated for 15 min, covered with Halocarbon 700 oil and then injected with either colchicine (Sigma-Aldrich, C3915, 1 mg/ml in H2O) or dextran Alexa568 (Thermo Fisher Scientific, D22912). Embryos were imaged immediately after the injection.
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4

Embryo Imaging and Drug Injection

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Embryos were dechorionated in 50% bleach solution and then transferred to an air-permeable membrane and covered with Halocarbon 27 oil. A CSU10b Yokogawa spinning disk confocal from Zeiss/ solamere Technologies Group with a 60x 1.4 NA objective was used to perform all time-lapse imaging. For drug injection, after dechorionation as described above, embryos were dehydrated for 15 minutes, covered with Halocarbon 700 oil and then injected with either LY294002 (Sigma, 25mM) or dextran Alexa568 (Thermo Fisher, 1mg/mL). Embryos were imaged 20 minutes after LY294002 injection or were imaged immediately after the dextran injection. LY294002 injection embryos showed reduced germband extension and variable defects in cephalic furrow formation.
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5

Nematostella Embryo Microinjection Protocol

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Animals were cultured at 18°C in 1:3 diluted sea water in the Sars Centre Cnidaria facility, and gamete production was induced by overnight exposure to light and elevated temperature (25°C)59 (link). Morpholinos were diluted in H2O, together with a tracer (Alexa568 Dextran (Molecular Probes) at 0.1 mg/ml), to a final concentration of either 1 mM (NvecGrl1#1) or 0.6 mM (NvecGrl1#2); control morpholinos were diluted to the same concentration in parallel experiments. Zygotes were microinjected using an Eppendorf Femtojet, with a volume equivalent to approximately 5% of the egg. Following injections, the embryos were transferred to Petri dishes containing Nematostella-medium and allowed to develop at 21°C until fixation. For images of live planulae, animals were mounted in 2% methylcellulose (in Nematostella Medium) and imaged on a Nikon Eclipse E800 microscope.
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6

Nematostella Embryo Microinjection Protocol

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Animals were cultured at 18°C in 1:3 diluted sea water in the Sars Centre Cnidaria facility, and gamete production was induced by overnight exposure to light and elevated temperature (25°C)59 (link). Morpholinos were diluted in H2O, together with a tracer (Alexa568 Dextran (Molecular Probes) at 0.1 mg/ml), to a final concentration of either 1 mM (NvecGrl1#1) or 0.6 mM (NvecGrl1#2); control morpholinos were diluted to the same concentration in parallel experiments. Zygotes were microinjected using an Eppendorf Femtojet, with a volume equivalent to approximately 5% of the egg. Following injections, the embryos were transferred to Petri dishes containing Nematostella-medium and allowed to develop at 21°C until fixation. For images of live planulae, animals were mounted in 2% methylcellulose (in Nematostella Medium) and imaged on a Nikon Eclipse E800 microscope.
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