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4 protocols using phospho tbk1 nak ser172

1

Autophagy Modulation in Mycobacterial Infection

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The following reagents were used in this study: Dexamethasone (Sigma-Aldrich, D4902), Hydrocortisone (Sangon Biotech, A610506), Monodansylcadaverine (MDC, Sigma-Aldrich, D4008), Rapamycin (Sigma-Aldrich, V900930), DMSO (Sigma-Aldrich, D2650), Bafilomycin A1 (Santa Cruz, sc-201550), Texas-red (Invitrogen, T-6134), TBK1 inhibitor BX795 (Selleckchem, S1274), Trizol reagent (Invitrogen, 15596-018), Middlebrook 7H9 Broth (BD Difco Laboratories, 271310), Middlebrook 7H10 Agar (BD Difco Laboratories, 262710). The following antibodies were used in this study: LC3 (Novus Biologicals, NB100-2220), GAPDH (ZSGB-BIO, TA-08), CD63 (Santa cruz, sc-15363), ATG5 (Cell Signaling, 12994), ATG6 (Cell Signaling, 3738), ATG7 (Cell Signaling, 8558), ATG12 (Cell Signaling, 4180), β-Tubulin (Cell Signaling, 2128), TBK1/NAK (Cell Signaling, 3013), Phospho-TBK1/NAK (Ser172) (Cell Signaling, 5483), Akt (Cell Signaling, 4691), Phospho-Akt (Ser473) (Cell Signaling, 4060), p70 S6 Kinase (Cell Signaling, 9202), Phospho-p70 S6 Kinase (Thr389) (Cell Signaling, 9206), 4E-BP1 (Cell Signaling, 9644), Phospho-4E-BP1 (Thr37/46) (Cell Signaling, 2855).
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2

Immunoblot Analysis of Tumor Signaling Pathways

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The proteins derived from 4T1 tumor tissues were extracted and further quantified by the BCA kit. Subsequently, the samples with equal amounts of proteins (20 μg) were separated through SDS-PAGE gel. Then the PVDF membranes with transferred proteins were blocked by 5% skim milk. After incubation with primary antibodies, including phospho-IRF-3 (Ser396) (4D4G) (4947 S, Cell Signaling Technology, 1:1000 dilution), IRF-3 (D83B9) (4302 S, Cell Signaling Technology, 1:1000 dilution), phospho-TBK1/NAK (Ser172) (D52C2) (5483 S, Cell Signaling Technology, 1:1000 dilution), TBK1/NAK (D1B4) (3504 T, Cell Signaling Technology, 1:1000 dilution), phospho-STING (Ser365) (D8F4W) (72971 S, Cell Signaling Technology, 1:1000 dilution), STING (A21051, ABclonal, 1:10000 dilution), and Tubulin β (bs-20694R, Bioss, 1:1000 dilution) overnight at 4 °C, the PVDF films were incubated with anti-rabbit IgG, HRP-linked antibody (7074 S, Cell Signaling Technology, 1:2000 dilution) for another 1 h. Chemiluminescence detection was carried out for protein band visualization with ECL Substrate. Uncropped and unprocessed full scan images of all western blots can be found in the Source Data file.
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3

Immune Signaling Pathway Profiling

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We used antibodies against TBK1 (Abcam, ab40676, 1:1000), phospho-TBK1/NAK (Ser172) (Cell Signaling, #5483, 1:1000), RIPK3 (Cell Signaling, #95702, 1:1000), phospho-RIPK3 (Cell Signaling, #91702, 1:1000), NF-κB (Proteintech, 10745-1-AP, 1:1000), phospho-NF-κB (Cell Signaling, #3033, 1:1000), GLUD1 (Abcam, ab168352, 1:1000), TNF-α (Abcam, ab183218, 1:1000), iNOS (Abcam, ab178945, 1:1000), GAPDH (Servicebio, GB12002, 1:1000). CD86 (Biolegend,105007), CD163 (Biolegend, 333606), and F4/80 (Biolegend, 123109). HRP-conjugated anti-rabbit and anti-mouse secondary antibodies were obtained from Boster Biological Technology (Wuhan, China). LPS was purchased from Sigma (L2880). Neutral liposomes and control liposomes (F70101C-NC-2) were purchased from FormuMax. M-CSF (576402) was obtained from Biolegend.
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4

Immune Signaling Pathway Profiling

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We used antibodies against TBK1 (Abcam, ab40676, 1:1000), phospho-TBK1/NAK (Ser172) (Cell Signaling, #5483, 1:1000), RIPK3 (Cell Signaling, #95702, 1:1000), phospho-RIPK3 (Cell Signaling, #91702, 1:1000), NF-κB (Proteintech, 10745-1-AP, 1:1000), phospho-NF-κB (Cell Signaling, #3033, 1:1000), GLUD1 (Abcam, ab168352, 1:1000), TNF-α (Abcam, ab183218, 1:1000), iNOS (Abcam, ab178945, 1:1000), GAPDH (Servicebio, GB12002, 1:1000). CD86 (Biolegend,105007), CD163 (Biolegend, 333606), and F4/80 (Biolegend, 123109). HRP-conjugated anti-rabbit and anti-mouse secondary antibodies were obtained from Boster Biological Technology (Wuhan, China). LPS was purchased from Sigma (L2880). Neutral liposomes and control liposomes (F70101C-NC-2) were purchased from FormuMax. M-CSF (576402) was obtained from Biolegend.
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